Oiva039388.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Oeneis ivallda
Gene Symbol
-
Assembly
GCA_029955525.1
Location
JARPMR010000026.1:15339329-15341842[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.00038 0.038 15.9 1.4 1 23 279 301 279 301 0.98
2 20 0.00032 0.032 16.1 3.1 1 23 307 329 307 329 0.98
3 20 5.4e-07 5.4e-05 24.8 1.0 1 23 335 357 335 357 0.99
4 20 4.6e-05 0.0046 18.8 0.4 1 23 363 385 363 385 0.98
5 20 0.00072 0.073 15.0 2.0 1 23 391 413 391 413 0.99
6 20 0.0028 0.28 13.2 4.4 1 23 419 441 419 441 0.98
7 20 0.0069 0.7 11.9 3.4 1 23 447 469 447 469 0.99
8 20 0.00021 0.021 16.7 5.7 1 23 475 497 475 497 0.98
9 20 0.0011 0.11 14.4 6.2 1 23 503 525 503 525 0.98
10 20 0.0041 0.41 12.6 5.4 1 23 531 553 531 553 0.95
11 20 0.00061 0.061 15.2 0.6 1 23 559 581 559 581 0.99
12 20 0.033 3.4 9.8 4.4 1 20 587 606 587 610 0.94
13 20 0.0015 0.15 14.0 2.0 1 23 616 638 616 638 0.99
14 20 0.00023 0.023 16.6 1.2 1 23 644 666 644 666 0.98
15 20 0.026 2.6 10.1 2.4 1 23 672 694 672 694 0.91
16 20 0.00011 0.011 17.5 1.2 1 23 700 722 700 722 0.99
17 20 1.4e-05 0.0014 20.4 3.7 1 23 729 751 729 751 0.97
18 20 1.7e-05 0.0017 20.2 1.4 1 23 757 779 757 779 0.98
19 20 0.00028 0.028 16.3 0.7 1 23 785 807 785 807 0.98
20 20 0.0021 0.21 13.5 2.2 1 23 812 835 812 835 0.97

Sequence Information

Coding Sequence
ATGGAAACAGACAAAAACACAGAAGTTTGCAGTGAAGCCGGTGATGAGCATACAGGCAGTattaaaatagaaatagaaaaagtaaCTGTCAAAAAACAAGCAAAAATAGATATTGTACACAAAGTTACTGATAGAGTTGAAGTACGAATAGAAAAAATGGAAATAAAGAACCATTCAAAAGTAAACATTGTCCATGGAGCTACTGATAATGTTGAAATAGAAGTAGAAAAAGTAGAAATATCTGATGTAGTCAATGGATCAATACTTAAACTGAAACCTTCAGATCAAAAATGTTTGGAAATTTCTTATGATAAAGACTCAAGTCACAGACAGCTTTCCAAAAGCAGTTTAGAAATTAATCATTGCAGTAATGAGAATGATACACTTTCTACAAATTTACATTTAGATCAAGCAATCGTATCATGTTCAAAACCAACAGTAGAATTTAGTTCAGAACAGGCGGTTGAGCGACTTTTAGAATTATGTTCAGAAAAGGCGGTTGAATTAAGTTCAAATAAGGCTGGCGAATCAGGTTTAGAAAATGCGGCAGAATTACGTCCAGATAAGGCTGTAGCATTAGGTTCAGAAAAGGGCGTAGAATTAAGTTCAGATGAGGCTGTTGAATTGAGTACAGAAAACGTTGGCGAATTCTGTTCAGAAAAAGCTGACCAATTAAGACAAGCAGATAAGGTGGCTCATTCAAACAAACGTGGCAAACCAAGGTCCATCAAGAAACGTAAAGTTGATCGAAAAAAGAAGTCTGCATCTATTAAAACGAAAAAACCTGGTGTTAATTATAAACAACATCCCTCTAATTATAAAAAGGGGAACAAATTCATTTGTGATTATTGTcagaatctttttaaaaaaaagtatggtTTGATCATTCATATGAGGAAGCATACAGGGTATAAACCATATTCGTGTGAGCAATGTGAATACAAATGTACTACGAAAGGCTCCTTAATATCACATATAAAAAAGCACACGGGAGAGAAACCTTACCAATGTGATATCTGTGGACGGAAGTTTGTGAACACTTCCGGTCTAACCAATCACAAgcgaacacacactggtgaaaaaccattTTCGTGTAAGCTATGTCCTTTAAAGTTTAGATTAAATGGCGCATTAAAAGTTCACATGAtgactcacactggtgagaaacGATACGTTTGCAACGTATGCCAGTCTAGATTCCGGACCACTGCGTGTTTGGCGAATCATGTCAGAACTCACACAGGAGAAAAACCGTATGCCTGTGACCATTGTCAGTACGAATGTGTGAAGAAATGGACCTTATTGAACCACATGCGGAAACATACAGGCGAAAAGCCTTACACTTGCAAGATTTGTCAGTATAAGTTTGCATGGAAATGCTCTTTATACTTACACATGCGAGTGCACAATGGTGAGAAACCCTTTTCATGCCAGTATTGTCACAGTAAGTTTACGAGAAAAAGTCGTCTAAGAATACATATCCGAAGCCACACCGGTGAGAAACCTTACGCTTGTAAATTTTGCGACTGCAAATGTTCGACGTCTGGTTCTCTAAGATCCCATTTGAGgactcacacaggtgaaaaaccttactTATGTCTGCACTGCGACTATAAATGCACTACCTCAACCTCTCTAAGATCTCACATGACGGTTCATAGCAAGGAAAAGCCTTATTCGTGCAAGCTCTGTGACTATAGATCTGCTCAACAGGGTGGCGTAAAGTCCCATATGAAGACACACACAGGGGAAAAACCCTATTCTTGCGACAGGTGTCCGTACAAATGTGCTACGAAAAGCAGTTTAAGGAGTCACGTTAACTGTGTACACGAGTCGATCAAGGCCTTTCGCTGTGAACAATGCGAATTCAGAACGAGTTCGAAATATGCTCTAACTGAACACAGcaggactcacactggtgaaaaaccataTTCATGCCAGGACTGTGATTACAAAGGCGCGTCCAAATCGGCTCTAAAAAAACACAACAGAAAGCACACTGGTATTAAGCCGTACCTATGCAAAGTTTGTCTTTGCAAATTTTCAACAATCGGCAGTTTGAAGAAGCACATGCCAACTCACACGGGGGAAAAACCTTACTCTTGCAACTTGTGTCAATACAAGACTGCTAGAAAGGACTCTTTAAAGGTGCACGCCAGGACTCACACGGGCGGAGAGAAGCGTCACAGCTGCGACGTGTGCAGCATGGCCTTCTATGATAAGGGACATCTGAAGCGGCACATGAACACACACACCGGCGTTAAACCGTTCAGTTGCGAACTGTGCCCTCGCAAGTACACCGAGAAGCGGTCTTTAAACGATCACATGAGAACGCACACTGGTGAGAAACCTTATGTGTGCAAGATTTGTCGATTCAAGTTCACGGCTGCGGGTGCTCTGAAGAGGCATTCGAGGatgcacactggtgagaagtaCACTTGCGATGTGTGTGACATTACATACATGGATAAATGCAAATTACTTAGACACATTACGAGAACTCATAAGTTTTAG
Protein Sequence
METDKNTEVCSEAGDEHTGSIKIEIEKVTVKKQAKIDIVHKVTDRVEVRIEKMEIKNHSKVNIVHGATDNVEIEVEKVEISDVVNGSILKLKPSDQKCLEISYDKDSSHRQLSKSSLEINHCSNENDTLSTNLHLDQAIVSCSKPTVEFSSEQAVERLLELCSEKAVELSSNKAGESGLENAAELRPDKAVALGSEKGVELSSDEAVELSTENVGEFCSEKADQLRQADKVAHSNKRGKPRSIKKRKVDRKKKSASIKTKKPGVNYKQHPSNYKKGNKFICDYCQNLFKKKYGLIIHMRKHTGYKPYSCEQCEYKCTTKGSLISHIKKHTGEKPYQCDICGRKFVNTSGLTNHKRTHTGEKPFSCKLCPLKFRLNGALKVHMMTHTGEKRYVCNVCQSRFRTTACLANHVRTHTGEKPYACDHCQYECVKKWTLLNHMRKHTGEKPYTCKICQYKFAWKCSLYLHMRVHNGEKPFSCQYCHSKFTRKSRLRIHIRSHTGEKPYACKFCDCKCSTSGSLRSHLRTHTGEKPYLCLHCDYKCTTSTSLRSHMTVHSKEKPYSCKLCDYRSAQQGGVKSHMKTHTGEKPYSCDRCPYKCATKSSLRSHVNCVHESIKAFRCEQCEFRTSSKYALTEHSRTHTGEKPYSCQDCDYKGASKSALKKHNRKHTGIKPYLCKVCLCKFSTIGSLKKHMPTHTGEKPYSCNLCQYKTARKDSLKVHARTHTGGEKRHSCDVCSMAFYDKGHLKRHMNTHTGVKPFSCELCPRKYTEKRSLNDHMRTHTGEKPYVCKICRFKFTAAGALKRHSRMHTGEKYTCDVCDITYMDKCKLLRHITRTHKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01092283;
90% Identity
-
80% Identity
-