Oiva032148.1
Basic Information
- Insect
- Oeneis ivallda
- Gene Symbol
- -
- Assembly
- GCA_029955525.1
- Location
- JARPMR010000021.1:17798137-17820864[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.0029 0.29 13.1 0.4 3 23 154 174 152 174 0.97 2 25 0.00013 0.013 17.3 0.6 1 23 179 201 179 201 0.96 3 25 0.004 0.4 12.7 1.2 1 23 207 230 207 230 0.98 4 25 0.00015 0.015 17.1 2.2 1 23 236 258 236 258 0.95 5 25 0.00015 0.015 17.1 2.2 1 23 284 306 284 306 0.95 6 25 0.00015 0.015 17.1 2.2 1 23 332 354 332 354 0.95 7 25 0.00015 0.015 17.1 2.2 1 23 380 402 380 402 0.95 8 25 0.00015 0.015 17.1 2.2 1 23 428 450 428 450 0.95 9 25 0.00015 0.015 17.1 2.2 1 23 476 498 476 498 0.95 10 25 0.00015 0.015 17.1 2.2 1 23 524 546 524 546 0.95 11 25 0.00015 0.015 17.1 2.2 1 23 572 594 572 594 0.95 12 25 0.00015 0.015 17.1 2.2 1 23 620 642 620 642 0.95 13 25 0.00015 0.015 17.1 2.2 1 23 668 690 668 690 0.95 14 25 0.00015 0.015 17.1 2.2 1 23 716 738 716 738 0.95 15 25 0.00015 0.015 17.1 2.2 1 23 764 786 764 786 0.95 16 25 0.00015 0.015 17.1 2.2 1 23 812 834 812 834 0.95 17 25 0.00015 0.015 17.1 2.2 1 23 860 882 860 882 0.95 18 25 0.00015 0.015 17.1 2.2 1 23 908 930 908 930 0.95 19 25 0.00015 0.015 17.1 2.2 1 23 956 978 956 978 0.95 20 25 0.00015 0.015 17.1 2.2 1 23 1004 1026 1004 1026 0.95 21 25 0.00015 0.015 17.1 2.2 1 23 1052 1074 1052 1074 0.95 22 25 0.00015 0.015 17.1 2.2 1 23 1100 1122 1100 1122 0.95 23 25 0.00015 0.015 17.1 2.2 1 23 1148 1170 1148 1170 0.95 24 25 0.00015 0.015 17.1 2.2 1 23 1196 1218 1196 1218 0.95 25 25 0.00014 0.014 17.3 1.2 1 23 1224 1247 1224 1247 0.97
Sequence Information
- Coding Sequence
- ATGTATGATGAAAATTGTATCAAAGAAGAGAATTTAACTGTAGACAAATCTAATGATGACCATTTCAACGATGACAATATCAAAAAGGACCTTAGTATTCAGGACAATgGTTTAACGGTTGTAAAACAAGAGGACATCACATGCGAGTTCGCAGTTGTTACAGAAGAAGTATCAAAAAGACTATCGAAACACTTAGAAGAAGTAAAGGAACCTATTGGAAGGCCTCAGAGGCAATCTAAAagGAAAATCGAGGAAATTGCAGGAAACGTACAGCAAGCGATTAAAAAGCGCGGGCCGTACAGAAAGAAAAATGAACTACCCAAGCGTAGGAGAAAGAACAACAGGAGTAAATTCACATACACACCGTTGTTCTGCATAGCATGCCAGATCAAGTTCACCTGTAAGAAAGACTTCCATGAGCACAGGGAGTCTTTGCACAAGGAAACCTGGGACAGCATATGTGAGGTATGCGGCAAGCAGTTCCTGACCCGCGGCTCGTTCCTGTCCCACATCCGGAGTCACCTGCCGGCCAAGCACGCCTGCAACGATTGTGACTACCGCACCGCCAACAAGTCTGACCTGGTCAAGCACCTGCTTATACACTCCGGTATAAAGAAGTACCAGTGCTCGCGATGCCCCAACAGCTACCACACGGTGTCGAACCTGCGCGACCACGAGCGGATCGTGCACGAGCGGCTGGTGCGGTTCGCGTGCGGCCGCTGCGGCAAGATGTTCTACGACCGCACGCACCTGCGGCGGCACGAGGACTCGCACAGCGAAGTGAAGCGCTACCACACGGTGTCGAACCTGCGCGACCACGAGCGGATCGTGCACGAGCGGCTGGTGCGGTTCGCGTGCGGCCGCTGCGGCAAGATGTTCTACGACCGCACGCACCTGCGGCGGCACGAGGACTCGCACAGCGAAGTGAAGCGCTACCACACGGTGTCGAACCTGCGCGACCACGAGCGGATCGTGCACGAGCGGCTGGTGCGGTTCGCGTGCGGCCGCTGCGGCAAGATGTTCTACGACCGCACGCACCTGCGGCGGCACGAGGACTCGCACAGCGAAGTGAAGCGCTACCACACGGTGTCGAACCTGCGCGACCACGAGCGGATCGTGCACGAGCGGCTGGTGCGGTTCGCGTGCGGCCGCTGCGGCAAGATGTTCTACGACCGCACGCACCTGCGGCGGCACGAGGACTCGCACAGCGAAGTGAAGCGCTACCACACGGTGTCGAACCTGCGCGACCACGAGCGGATCGTGCACGAGCGGCTGGTGCGGTTCGCGTGCGGCCGCTGCGGCAAGATGTTCTACGACCGCACGCACCTGCGGCGGCACGAGGACTCGCACAGCGAAGTGAAGCGCTACCACACGGTGTCGAACCTGCGCGACCACGAGCGGATCGTGCACGAGCGGCTGGTGCGGTTCGCGTGCGGCCGCTGCGGCAAGATGTTCTACGACCGCACGCACCTGCGGCGGCACGAGGACTCGCACAGCGAAGTGAAGCGCTACCACACGGTGTCGAACCTGCGCGACCACGAGCGGATCGTGCACGAGCGGCTGGTGCGGTTCGCGTGCGGCCGCTGCGGCAAGATGTTCTACGACCGCACGCACCTGCGGCGGCACGAGGACTCGCACAGCGAAGTGAAGCGCTACCACACGGTGTCGAACCTGCGCGACCACGAGCGGATCGTGCACGAGCGGCTGGTGCGGTTCGCGTGCGGCCGCTGCGGCAAGATGTTCTACGACCGCACGCACCTGCGGCGGCACGAGGACTCGCACAGCGAAGTGAAGCGCTACCACACGGTGTCGAACCTGCGCGACCACGAGCGGATCGTGCACGAGCGGCTGGTGCGGTTCGCGTGCGGCCGCTGCGGCAAGATGTTCTACGACCGCACGCACCTGCGGCGGCACGAGGACTCGCACAGCGAAGTGAAGCGCTACCACACGGTGTCGAACCTGCGCGACCACGAGCGGATCGTGCACGAGCGGCTGGTGCGGTTCGCGTGCGGCCGCTGCGGCAAGATGTTCTACGACCGCACGCACCTGCGGCGGCACGAGGACTCGCACAGCGAAGTGAAGCGCTACCACACGGTGTCGAACCTGCGCGACCACGAGCGGATCGTGCACGAGCGGCTGGTGCGGTTCGCGTGCGGCCGCTGCGGCAAGATGTTCTACGACCGCACGCACCTGCGGCGGCACGAGGACTCGCACAGCGAAGTGAAGCGCTACCACACGGTGTCGAACCTGCGCGACCACGAGCGGATCGTGCACGAGCGGCTGGTGCGGTTCGCGTGCGGCCGCTGCGGCAAGATGTTCTACGACCGCACGCACCTGCGGCGGCACGAGGACTCGCACAGCGAAGTGAAGCGCTACCACACGGTGTCGAACCTGCGCGACCACGAGCGGATCGTGCACGAGCGGCTGGTGCGGTTCGCGTGCGGCCGCTGCGGCAAGATGTTCTACGACCGCACGCACCTGCGGCGGCACGAGGACTCGCACAGCGAAGTGAAGCGCTACCACACGGTGTCGAACCTGCGCGACCACGAGCGGATCGTGCACGAGCGGCTGGTGCGGTTCGCGTGCGGCCGCTGCGGCAAGATGTTCTACGACCGCACGCACCTGCGGCGGCACGAGGACTCGCACAGCGAAGTGAAGCGCTACCACACGGTGTCGAACCTGCGCGACCACGAGCGGATCGTGCACGAGCGGCTGGTGCGGTTCGCGTGCGGCCGCTGCGGCAAGATGTTCTACGACCGCACGCACCTGCGGCGGCACGAGGACTCGCACAGCGAAGTGAAGCGCTACCACACGGTGTCGAACCTGCGCGACCACGAGCGGATCGTGCACGAGCGGCTGGTGCGGTTCGCGTGCGGCCGCTGCGGCAAGATGTTCTACGACCGCACGCACCTGCGGCGGCACGAGGACTCGCACAGCGAAGTGAAGCGCTACCACACGGTGTCGAACCTGCGCGACCACGAGCGGATCGTGCACGAGCGGCTGGTGCGGTTCGCGTGCGGCCGCTGCGGCAAGATGTTCTACGACCGCACGCACCTGCGGCGGCACGAGGACTCGCACAGCGAAGTGAAGCGCTACCACACGGTGTCGAACCTGCGCGACCACGAGCGGATCGTGCACGAGCGGCTGGTGCGGTTCGCGTGCGGCCGCTGCGGCAAGATGTTCTACGACCGCACGCACCTGCGGCGGCACGAGGACTCGCACAGCGAAGTGAAGCGCTACCACACGGTGTCGAACCTGCGCGACCACGAGCGGATCGTGCACGAGCGGCTGGTGCGGTTCGCGTGCGGCCGCTGCGGCAAGATGTTCTACGACCGCACGCACCTGCGGCGGCACGAGGACTCGCACAGCGAAGTGAAGCGCTACCACACGGTGTCGAACCTGCGCGACCACGAGCGGATCGTGCACGAGCGGCTGGTGCGGTTCGCGTGCGGCCGCTGCGGCAAGATGTTCTACGACCGCACGCACCTGCGGCGGCACGAGGACTCGCACAGCGAAGTGAAGCGCTACCACACGGTGTCGAACCTGCGCGACCACGAGCGGATCGTGCACGAGCGGCTGGTGCGGTTCGCGTGCGGCCGCTGCGGCAAGATGTTCTACGACCGCACGCACCTGCGGCGGCACGAGGACTCGCACAGCGAAGTGAAGCGCTTCGTATGCGAGGTGTGTAACACCGCTTTCTCCCGCCGCACCTATTGGAAGAAGCATCTCCTGAAGCAGCACAGCATCACGACCCCCGCGCTGCGGCCGGGCAGAGAGCGCATCCTCGTCATCGGCGCCGTCACATCCGAATGA
- Protein Sequence
- MYDENCIKEENLTVDKSNDDHFNDDNIKKDLSIQDNGLTVVKQEDITCEFAVVTEEVSKRLSKHLEEVKEPIGRPQRQSKRKIEEIAGNVQQAIKKRGPYRKKNELPKRRRKNNRSKFTYTPLFCIACQIKFTCKKDFHEHRESLHKETWDSICEVCGKQFLTRGSFLSHIRSHLPAKHACNDCDYRTANKSDLVKHLLIHSGIKKYQCSRCPNSYHTVSNLRDHERIVHERLVRFACGRCGKMFYDRTHLRRHEDSHSEVKRYHTVSNLRDHERIVHERLVRFACGRCGKMFYDRTHLRRHEDSHSEVKRYHTVSNLRDHERIVHERLVRFACGRCGKMFYDRTHLRRHEDSHSEVKRYHTVSNLRDHERIVHERLVRFACGRCGKMFYDRTHLRRHEDSHSEVKRYHTVSNLRDHERIVHERLVRFACGRCGKMFYDRTHLRRHEDSHSEVKRYHTVSNLRDHERIVHERLVRFACGRCGKMFYDRTHLRRHEDSHSEVKRYHTVSNLRDHERIVHERLVRFACGRCGKMFYDRTHLRRHEDSHSEVKRYHTVSNLRDHERIVHERLVRFACGRCGKMFYDRTHLRRHEDSHSEVKRYHTVSNLRDHERIVHERLVRFACGRCGKMFYDRTHLRRHEDSHSEVKRYHTVSNLRDHERIVHERLVRFACGRCGKMFYDRTHLRRHEDSHSEVKRYHTVSNLRDHERIVHERLVRFACGRCGKMFYDRTHLRRHEDSHSEVKRYHTVSNLRDHERIVHERLVRFACGRCGKMFYDRTHLRRHEDSHSEVKRYHTVSNLRDHERIVHERLVRFACGRCGKMFYDRTHLRRHEDSHSEVKRYHTVSNLRDHERIVHERLVRFACGRCGKMFYDRTHLRRHEDSHSEVKRYHTVSNLRDHERIVHERLVRFACGRCGKMFYDRTHLRRHEDSHSEVKRYHTVSNLRDHERIVHERLVRFACGRCGKMFYDRTHLRRHEDSHSEVKRYHTVSNLRDHERIVHERLVRFACGRCGKMFYDRTHLRRHEDSHSEVKRYHTVSNLRDHERIVHERLVRFACGRCGKMFYDRTHLRRHEDSHSEVKRYHTVSNLRDHERIVHERLVRFACGRCGKMFYDRTHLRRHEDSHSEVKRYHTVSNLRDHERIVHERLVRFACGRCGKMFYDRTHLRRHEDSHSEVKRYHTVSNLRDHERIVHERLVRFACGRCGKMFYDRTHLRRHEDSHSEVKRFVCEVCNTAFSRRTYWKKHLLKQHSITTPALRPGRERILVIGAVTSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -