Oiva039398.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Oeneis ivallda
Gene Symbol
-
Assembly
GCA_029955525.1
Location
JARPMR010000026.1:15419060-15424188[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.00017 0.017 17.0 1.8 2 23 355 376 354 376 0.96
2 21 0.0023 0.24 13.4 3.7 1 23 386 408 386 408 0.95
3 21 0.0002 0.02 16.8 0.5 1 23 414 436 414 436 0.99
4 21 0.014 1.4 11.0 4.3 1 21 442 462 442 465 0.95
5 21 0.005 0.5 12.4 1.2 1 23 471 493 471 493 0.99
6 21 0.00015 0.015 17.2 6.9 1 23 499 521 499 521 0.99
7 21 0.00019 0.019 16.8 2.3 1 23 527 549 527 549 0.94
8 21 0.018 1.8 10.6 1.3 1 23 555 577 555 577 0.98
9 21 9.2e-05 0.0093 17.8 3.5 1 23 584 606 584 606 0.97
10 21 1.4e-05 0.0014 20.4 1.2 1 23 612 634 612 634 0.98
11 21 0.014 1.4 11.0 1.8 1 23 640 662 640 662 0.98
12 21 0.00087 0.088 14.7 4.4 1 23 668 690 668 690 0.99
13 21 6.8e-06 0.00068 21.4 2.4 1 23 696 718 696 718 0.98
14 21 0.0072 0.73 11.8 5.3 1 23 724 746 724 746 0.97
15 21 0.051 5.1 9.2 3.3 2 23 753 774 752 774 0.97
16 21 0.00014 0.014 17.3 2.8 1 23 780 802 780 802 0.99
17 21 3.9e-05 0.0039 19.0 1.3 1 23 808 830 808 830 0.97
18 21 0.00058 0.059 15.3 1.0 1 23 836 858 836 858 0.98
19 21 0.034 3.4 9.7 5.8 1 23 864 886 864 886 0.99
20 21 6.5e-06 0.00065 21.4 1.5 1 23 892 914 892 914 0.98
21 21 5.3e-05 0.0053 18.6 0.4 1 23 919 942 919 942 0.94

Sequence Information

Coding Sequence
ATGCAGTGTTCTGTGCCTGAGTGCGGTAATGCAGCAAGAAAGAATTCCGAATCCCTTGGAGTAACTTTTCACAAGTTTCCCACCTCACCCCCAGAGCGCAATGCCTGGCTTCAAGCTCTCGGTGTGCCCGGACCTCGCGAGCGGCGCGgcgctgtggtctgctcgcagcactTCTTAGCTGAGGACTTCTCTACCACGAGGAGTGGATCAAAGAAAATGCGACTTGGAGCTGTTCCTTTTGTGATACACGACACACAACTGTCTGATATTAATCATAAAGCAATGGAAACAGACAAAAATACAGAAGTTTACATTGAAACCGGCGATGAGCATACAGACAGTACTAAAATAGAAAAAGTAACTGTGAAAAAACAAGCAAAACTAGATATTGTACACAGAGTAACTGACAGAGTTGAAGTACGAATAGAAAAAATGGACTTAAAAAACCATTCAAAAGTAAACATTGTCAATGGAGCTACTGATTATgttgaaatagaaatagaaaaagcAGAAATACCTGATGTAGACAATGGGTCAATCCTTAAACTGGAACCTTCAAATCAAAAGTGTTTGGAAATATCTCATGATAAAGACTCAAGCCAAAATCAGCTTTCCCAAAGCAGTTTCGAAATTAATCATTGCATTAATGAGAATGATACACCATCTACAAATTTACATTCAGATCAAGCAATCGTATTATGTTCAGAACCAACAGTAGAATTTAGTTCAGAACAGGCGGTTGAACTAATTTCAGAATTATGTTCAGAAAAGGTGGTTGCATTAAGTTCAGAAAAAACTGGTGAATTAGGTTTAGAAAAGGATGTAGAATTATGTTCAGATAAGGCTGTTGAATTAAGTACAGAAGAGGTTGGCAAATTCTGTTCAGAAAAAGCTGACCAATCAAGACAAGCAGACAAGGTGGTTGATTCAAACAAACGTGGAAAACCAAGGTCCATCAATAAACATAAAGTTGAACGAAAAAAGAAATATGCATCCCTTAAAAAGACTAAACCTGGTGTTGAGTATCAGGGTACCTATAATTATAGAAAAGGGAATAAGTTAATTTGTGATTATTGTCAGTTTGTATGTAAAAGAAAGGATGGTTTGATCCTTCATATGAGAAAACATACAGGgactcacacaggtgaaaaaccttactTATGTCTGCACTGCGACTATAAATGCGCTACCTCAAGCTCTCTAAGATCTCACATAACGGTTCATAGCAAGGAAAAGCCTTATTCGTGCAAGCTCTGTGACTATAGAGCTGCTCAACCGCGTGGCCTAAAGTCCCATATGAAGACACACACAGGGGAAAAACCCTATTCTTGCGACAGGTGTCCGTACAAATGTGCTACGAAAAGCAGTTTAAGGAGTCACATTAACTGTGTACACGAGTCGATCAAGGCCTTTCGCTGCGAACAATGCGAATTCAGAGCGAGTTCGAAATATGCTCTAACTGAACACAGcaggactcacactggtgaaaaaccataTTCCTGCCAGCACTGTGATTACAAATGTGCGTCCAAATGGTCTCTAAAAAAACACCAGAGAACGCACACTGGTATAAAGCCGTACCAATGTGAAGtttgtttttctaaattttcaacaaaaaacaatttgAAGAAGCACATGCCAACTCACACTGGGGAAACACCTTACTCTTGCAACTTATGTCAATACAAGACTGCTATAAAAGACCGTTTAACGAGGCACGGCAGGACTCACACGGGCGGAGAGAAGCGTCACAGCTGCGACGTGTGCAGCATGGCCTTCTATGAAAAGGCCCATCTGAAGCGGCACATGAACACACACACCGGCGTTAGACCGTTCAGTTGCGAACTGTGCCCTCGCAAGTACACCACGAAACGCGGTTTAAGCGATCACATGAGAacgcacactggtgaaaaaccttactCGTGCGGGACCTGCGCCTACAGGTGTACTAATTTAAACTTACTCCGGTCCCACGTCAGGgtccacactggtgagaaaccTTACTCATGTACGCAGTGTGAATACAAATGTTCAAACTCCAACTCCTTAAAAATGCACGTAAGAACacacacgggtgaaaaaccttatcCGTGCGAAGTGTGCAACCGTAAATTCGCAACATCTTCCAGTATCAAACGTCACATGAGGCATCACAGCGGTGAAAAGTCTCACTACTGCAAGTACTGCCCATTCAAGTGTATAGAGAAAGGCAGCCTGAAGACCCACATGAAGATCCACACGGGCGCGGAGCCATTGTATTGCGACCACTGCTCGTTTCAAACGACGCAGAAAACGTCTATAATTtaccacatgaggactcacactggtgaaaaaccgtATTCTTGCACACATTGCAAGTTTACAACTGCGTCTCGGAGCGCACTAACAATCCACATCAGGcgacacactggtgaaaaaccattCGCCTGCACGCAGTGCGATTATAAGTTCGCTTCCTCGAACGGTCTGAAGTCCCACACGAGGACGCACACAGGTGAGAAGCCCTACAGTTGTCAACAGTGCGCATACGAATGCTCGACTTCGGGAGCTCTAAAATCCCATATAAGAGtgcacactggagaaaaaccatACTCTTGCAAGCGATGTGAGTACAGAACCACGTGCAAAAGCTCTCTTACATTACACATGAGAACGCACACTGGTGAGAAACCTTATGCGTGTAAGATTTGTCGATACAAGTTCACGACTGCCAGTGGTCTGAGGAGCCACTTGAGGaagcacactggtgagaagtaCACTTGCGATGTGTGTGACACTAAATACGTGGATAAAAGTAAATTACGAAATCACATTATTGGAACTCATAAGTTTTAG
Protein Sequence
MQCSVPECGNAARKNSESLGVTFHKFPTSPPERNAWLQALGVPGPRERRGAVVCSQHFLAEDFSTTRSGSKKMRLGAVPFVIHDTQLSDINHKAMETDKNTEVYIETGDEHTDSTKIEKVTVKKQAKLDIVHRVTDRVEVRIEKMDLKNHSKVNIVNGATDYVEIEIEKAEIPDVDNGSILKLEPSNQKCLEISHDKDSSQNQLSQSSFEINHCINENDTPSTNLHSDQAIVLCSEPTVEFSSEQAVELISELCSEKVVALSSEKTGELGLEKDVELCSDKAVELSTEEVGKFCSEKADQSRQADKVVDSNKRGKPRSINKHKVERKKKYASLKKTKPGVEYQGTYNYRKGNKLICDYCQFVCKRKDGLILHMRKHTGTHTGEKPYLCLHCDYKCATSSSLRSHITVHSKEKPYSCKLCDYRAAQPRGLKSHMKTHTGEKPYSCDRCPYKCATKSSLRSHINCVHESIKAFRCEQCEFRASSKYALTEHSRTHTGEKPYSCQHCDYKCASKWSLKKHQRTHTGIKPYQCEVCFSKFSTKNNLKKHMPTHTGETPYSCNLCQYKTAIKDRLTRHGRTHTGGEKRHSCDVCSMAFYEKAHLKRHMNTHTGVRPFSCELCPRKYTTKRGLSDHMRTHTGEKPYSCGTCAYRCTNLNLLRSHVRVHTGEKPYSCTQCEYKCSNSNSLKMHVRTHTGEKPYPCEVCNRKFATSSSIKRHMRHHSGEKSHYCKYCPFKCIEKGSLKTHMKIHTGAEPLYCDHCSFQTTQKTSIIYHMRTHTGEKPYSCTHCKFTTASRSALTIHIRRHTGEKPFACTQCDYKFASSNGLKSHTRTHTGEKPYSCQQCAYECSTSGALKSHIRVHTGEKPYSCKRCEYRTTCKSSLTLHMRTHTGEKPYACKICRYKFTTASGLRSHLRKHTGEKYTCDVCDTKYVDKSKLRNHIIGTHKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-