Oiva039396.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Oeneis ivallda
Gene Symbol
-
Assembly
GCA_029955525.1
Location
JARPMR010000026.1:15397114-15401898[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.0048 0.48 12.4 0.9 1 23 325 347 325 347 0.98
2 21 0.00051 0.051 15.5 5.2 1 23 353 375 353 375 0.98
3 21 3.5e-07 3.5e-05 25.4 0.4 1 23 381 403 381 403 0.99
4 21 6.4e-05 0.0065 18.3 0.4 1 23 409 431 409 431 0.99
5 21 0.00013 0.013 17.3 2.0 1 23 437 459 437 459 0.99
6 21 0.00081 0.081 14.8 2.3 1 23 465 487 465 487 0.98
7 21 3.1e-05 0.0031 19.3 1.0 1 23 493 515 493 515 0.99
8 21 8.9e-05 0.0089 17.9 7.3 1 23 521 543 521 543 0.98
9 21 0.0029 0.29 13.1 4.8 1 23 549 571 549 571 0.98
10 21 0.00029 0.029 16.2 5.0 1 23 577 599 577 599 0.97
11 21 0.0039 0.39 12.7 0.8 1 23 605 627 605 627 0.99
12 21 0.1 10 8.3 5.4 1 21 633 653 633 656 0.95
13 21 0.0028 0.28 13.2 2.9 1 23 662 684 662 684 0.99
14 21 0.0065 0.66 12.0 6.0 1 23 690 712 690 712 0.99
15 21 2.3e-05 0.0023 19.7 4.6 1 23 718 740 718 740 0.94
16 21 0.00014 0.014 17.2 1.3 1 23 746 768 746 768 0.99
17 21 0.0012 0.12 14.3 3.8 1 23 775 797 775 797 0.97
18 21 0.00017 0.017 17.0 1.1 1 23 803 825 803 825 0.98
19 21 0.013 1.3 11.0 7.9 1 23 831 853 831 853 0.99
20 21 9.2e-05 0.0093 17.8 3.7 1 23 859 881 859 881 0.98
21 21 3.7e-05 0.0037 19.1 2.1 1 23 886 908 886 908 0.98

Sequence Information

Coding Sequence
ATGCAGTGTTCTGTGCCTGACTGCGGTAATGCAGCAAGAAAGGATTCCGAATCCCTTGGAGTAACTTTTCACAAGTTTCCCGCCTCACCCCCAGAGCGCAATGCCTGGCTTCAAGCTCTCGGTGTGCCCGGATCTCGCGAGCGGCGCGgcgctgtggtctgctcgcagcactTCTTAGCTGAGGACTTCTCTACCACGAGGATTGGATCAAAGGAAATGCGACTTGGAGCTGTTCCTTTTGTGATAAACGACACACAACTGCCTGATATTAATCATATAGCAATGGAAACAGACAAAAATACAGAAGTTTACATTGAAACCGGCGATGAGCATACAGACAGTACTAAAATAGAAAAAGTAACTGTGAAAAAACAAGCAATACTAGATATTGTACACGAACTACGAGTAACTGACAGAGTTCAAGTACGAATAGAAAAAATGGACTTAAAAAACCGTTCAAAAGTAAACATTGTCAATGGAGCTACTGATTatgttgaaataaaaatagaaaaaccTGACGTAGACAATGGATCAATCCTTAAACTGGAACCTTCAGATCAAAAATGTTTGGAAATATCTCATGATAAAGACTCAAGCCACAATCAGCTTTCCAAAAGCAGTTTAGAAATTAATCATTGTAGTAATGAAAATGATACACCATCTACAGAACATTCAGAACAAGCTATTGTATTTTGTTCAGAACCAACATTAGAATTTAGTTTAGAACAGGCGGTTGAACTAATTTCAGATAAGGCTGTTGAATTGTGTACAGTAAAGGTTGACGAGTTCTGTTCGGAAAAAGCTGACCAATCAAGACAAGCAGACATGGCGTTTGATTCAAACAAATGTGGCAAACCAAGGGTCATCAATAAATTTAAAGTTGAACGAAAAAAGAAACCTGCATCCATTAAAAGGAAAAAAACTCATGTTAATTATAAACAACATCCCTCTAATGATAGTAAAGGGAATAAATTCATTTGTGATTATTGTCttaatctatttaataaaaagtatGGTTTGATCATTCATATGAGGAAGCATACAGGGTATAAACCATATTCGTGTGAGCATTGTGAATACAAATGTACTACGAAAGGCTCCTTAATATCACATATAAAAAAGCACACAGGAGAGAAACCTTACCAATGTGAAATCTGTGGTTGGAAATTTGCAAACACTTCCGGTCTAACCAATCACAGgcgaacacacactggtgaaaaaccataTTCGTGTAAGCTATGTCCTTTAAAGTTTAGGGAAAAAGGTGCCTTAAAAGGTCACATGATGACTCACACCGGTGAGAAAAGATATGTTTGCACAATATGCCAGTCTAGATTCAGAACCAGTGCGTGTTTGGCGAATCATGTCAGGACTCACACGGGAGAAAAACCATACGCCTGTGATCATTGTCAGTATAAAAGTGTGAAGAAATGGACCTTAGTGAACCACATGCGGACACATACAGGCGAAAAGCCTTACACTTGCAAGATTTGTCAGTATAAGTTTGTAAGTGGCTCATCTTTATACTTACACATGCGAGTGCACAATGGTGAGAAACTCTTTTCATGTCAGCATTGTCACAGTAAGTTTACAAGAAAAAGTTCACTCAGAATACATATCCGAAGCCACACCGGTGAGAAACCTTACGCTTGTAAATTTTGCGACTACAAATGTTCGATGAGTAGTTCTCTAAGATCCCATTCGAGgactcacacaggtgaaaaaccttacATATGTCTGCACTGCGACTATAAATGCACTACCTCAAGCTCTCTAAGATCGCACATGACGGTTCATAGCAAGGAAAAGCCTTATTCGTGCAAGCTCTGTGACTATAGAGCTGCCCAAATGGGCCGCCTAAAGTCCCATATGAAGACTCACACTGGGGAAAAACCCTATTCTTGTGACAGATGTCAGTTCAAATGTGCTACAAAAAGCAGTTTAAGGAGTCACATTAACTGTGTACACGAGTCAATCAAGGCCTTTCGCTGTGAACAATGCGAATTCAGAACGAGTTCGAAATATACTTTAACTGAACACAGcaggactcacactggtgaaaaaccataTTCCTGCCAGCACTGTGATTACAAATGCGCGTTCAAAAAGGCTCTAAAAGACCACGAGAGAACGCACACTGGTATAAAGCCGTACCAATGCAAAGTTTGTTCGTGTAAATTTTCAACAAGCAGCAATTTGAAGAAGCACATGCCAACTCACACTGGGGAAAAACCTTACTCTTGCAACTTGTGTCAATACAAGACTGTTAGAAAGGACTCTTTAAAGGTGCACGCCAGGACTCACACAGGCGGAGAGAAGCGTCACAGCTGCGACGTGTGCAGCATGGCCTTCTATGAAATGACCCATCTGAGGCGGCACATGAACACACACACCGGCGTTAAACCGTTCAGTTGCGAACTTTGCCCTCGCAAGTACACCGAGAAGCGCTCTTTAAACGAACACATGAAAttgcacactggtgaaaaaccttactCTTGCAAGCATTGCAAGTACAGAACCACGTGCAATAGCTCTCTAACAGTACACATGAGAACGCACACTGGCGAGAAACCTTATGCGTGTAAGATTTGTCGATACAAGTGCACGACTTCGAGTGGTCTGAGGAGCCACTTGAGGacgcacactggtgagaagtaCATTTGCGATGTGTGTGACACTAAATACGCGCATAAAAGCAAGTTACGAGAGCACATGACAACTCATAAGTTTGAGTAA
Protein Sequence
MQCSVPDCGNAARKDSESLGVTFHKFPASPPERNAWLQALGVPGSRERRGAVVCSQHFLAEDFSTTRIGSKEMRLGAVPFVINDTQLPDINHIAMETDKNTEVYIETGDEHTDSTKIEKVTVKKQAILDIVHELRVTDRVQVRIEKMDLKNRSKVNIVNGATDYVEIKIEKPDVDNGSILKLEPSDQKCLEISHDKDSSHNQLSKSSLEINHCSNENDTPSTEHSEQAIVFCSEPTLEFSLEQAVELISDKAVELCTVKVDEFCSEKADQSRQADMAFDSNKCGKPRVINKFKVERKKKPASIKRKKTHVNYKQHPSNDSKGNKFICDYCLNLFNKKYGLIIHMRKHTGYKPYSCEHCEYKCTTKGSLISHIKKHTGEKPYQCEICGWKFANTSGLTNHRRTHTGEKPYSCKLCPLKFREKGALKGHMMTHTGEKRYVCTICQSRFRTSACLANHVRTHTGEKPYACDHCQYKSVKKWTLVNHMRTHTGEKPYTCKICQYKFVSGSSLYLHMRVHNGEKLFSCQHCHSKFTRKSSLRIHIRSHTGEKPYACKFCDYKCSMSSSLRSHSRTHTGEKPYICLHCDYKCTTSSSLRSHMTVHSKEKPYSCKLCDYRAAQMGRLKSHMKTHTGEKPYSCDRCQFKCATKSSLRSHINCVHESIKAFRCEQCEFRTSSKYTLTEHSRTHTGEKPYSCQHCDYKCAFKKALKDHERTHTGIKPYQCKVCSCKFSTSSNLKKHMPTHTGEKPYSCNLCQYKTVRKDSLKVHARTHTGGEKRHSCDVCSMAFYEMTHLRRHMNTHTGVKPFSCELCPRKYTEKRSLNEHMKLHTGEKPYSCKHCKYRTTCNSSLTVHMRTHTGEKPYACKICRYKCTTSSGLRSHLRTHTGEKYICDVCDTKYAHKSKLREHMTTHKFE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01092283;
90% Identity
-
80% Identity
-