Oiva032167.1
Basic Information
- Insect
- Oeneis ivallda
- Gene Symbol
- -
- Assembly
- GCA_029955525.1
- Location
- JARPMR010000021.1:17962810-17969855[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.0063 0.63 12.0 0.2 1 23 35 57 35 57 0.98 2 32 7.5 7.5e+02 2.4 0.7 2 23 85 107 84 108 0.94 3 32 0.0088 0.88 11.6 0.5 2 23 128 150 127 150 0.95 4 32 0.0094 0.95 11.5 0.8 2 23 156 178 155 178 0.96 5 32 0.07 7.1 8.7 4.0 1 23 182 205 182 205 0.94 6 32 6.7 6.7e+02 2.5 2.7 1 23 207 230 207 230 0.88 7 32 0.001 0.1 14.5 3.8 1 23 334 356 334 356 0.99 8 32 1 1.1e+02 5.0 0.0 3 23 385 406 383 406 0.91 9 32 0.0016 0.16 13.9 1.5 2 23 427 449 427 449 0.97 10 32 0.28 29 6.8 0.8 2 23 455 477 454 477 0.92 11 32 0.0032 0.32 13.0 3.4 1 23 482 505 482 505 0.97 12 32 0.00019 0.019 16.8 0.5 2 23 508 530 508 530 0.97 13 32 0.0074 0.74 11.8 2.5 2 21 538 557 537 558 0.95 14 32 0.022 2.2 10.3 0.4 1 21 614 634 614 637 0.90 15 32 8.4 8.5e+02 2.2 1.2 2 23 665 687 664 687 0.92 16 32 9e-05 0.0091 17.8 0.2 2 23 710 732 709 732 0.96 17 32 0.00039 0.039 15.9 0.1 3 23 739 760 738 760 0.93 18 32 0.16 16 7.6 6.5 2 23 765 787 764 787 0.93 19 32 0.00094 0.095 14.6 3.4 1 23 792 815 792 815 0.95 20 32 1e-05 0.001 20.8 5.2 1 23 819 842 819 842 0.97 21 32 0.00076 0.076 14.9 0.3 2 23 849 870 848 870 0.96 22 32 0.3 30 6.8 0.7 1 16 876 891 876 893 0.80 23 32 0.18 18 7.4 0.2 1 23 933 956 933 956 0.96 24 32 0.012 1.3 11.1 0.1 3 23 988 1009 986 1009 0.94 25 32 0.0018 0.18 13.7 1.7 2 23 1032 1053 1032 1054 0.94 26 32 0.0066 0.67 12.0 1.5 1 23 1059 1082 1059 1082 0.95 27 32 0.91 91 5.2 0.2 1 23 1087 1110 1087 1110 0.91 28 32 0.0098 0.99 11.4 1.0 2 23 1116 1138 1115 1138 0.92 29 32 0.00045 0.046 15.6 0.1 2 23 1146 1168 1145 1168 0.97 30 32 0.069 6.9 8.8 0.0 2 23 1175 1196 1174 1196 0.96 31 32 8.1e-08 8.1e-06 27.4 1.2 1 23 1202 1224 1202 1224 0.98 32 32 2.1e-05 0.0021 19.9 2.3 1 23 1230 1253 1230 1253 0.97
Sequence Information
- Coding Sequence
- ATGAGACCAGCCAAGAAATCTAGCGCCAATAAGTTAAGGAGATCAAATCTTCAGATATTATTCAACAATACAACCATAATTCCGTTTAAATGGCGTGGAAAGTACGTATGTTTTTACTGTGGAGAAGATGTTAAAGAATACGAGGAATTAAGGCAACACACAAGAGGCCATGGCGTATGTTCAGATGACAATAGTGCTCTTAGACAAGTGAAAGCAGCGGATGCCGAAGTCAAAGTTGACGTATCAGAAATAACTTGTAATCTATGCTATGAAGATTTAACAAATTTTGATAATACAGTTGAACATCTAATGGTTAAACATCACTTACCATACGACAAAGATGTGAAGTTACCAATAGCTCCATACAGACTGTTGGATTTAAATTGCCTGCTATGTGATCAGAAATTTAATTATCTTAGCAAATTGGTTTCTCATGTTAATACAGACCATCCGAAAGATTGTCTAGTTTGCGTTGAATGTAAACAGGAGTTCAATAAAAAGAGAGATCTCGACGCTCATTTTCGAACTAAGCACAGAAATCAGTATACTTGTTCAAAGTGTTGTTTAAGTTTTTCTACTAACTCTGAACTTTTGAGCCACAAAAGCAATTCCCATCCATTTCTTTGCAATATTTGTTTCAAACCTTTCATGTCGCTCAAGAAATGTTTACAGCATATAAAGGCGACTCATCTAGATGCGATTCTTAAATGTGGTTTTTGCTTTAAATCTAGTAACGCTAAAGCTTTTCTTGAACACGCTGTCAAATGTAACGTAAACTCGAAAAATTTAAACGAAGTCGTTTTACCTGATGATAATAAAAAGCCTACAGTTAAACTAATAAGGGATAACATAGCGTGTATACTGAACATGTCTACAGTTGTGCCGTTCAAGTATTTTATGTGTGAAGGCCCGTACGAGACAACAACTGTGCGGAGAAGGAAAAATTTGCAAACTCTGTTCAACAACACCACCATAATGCCTTTCAAATGGCGCGGGAGGTACCAGTGTTTTTATTGCGGCATGTGTTACACCGATTACCCAGAGTTTTGGAAACATACAAAATCTCATGGGCTATGCAACATTAGCGATAACGCTCTAAAAGTCACCAAGGGGAATAATATAGAACTAAAAATCGATATATCCGAAATTGCCTGTGAAATCTGTTACGAACCGTTCGCAAATTTCGACGAAATAATCGACCATTTGATTGGCAAGCACGAATTGGAATACGATAAAACTATAGACATGCCGTTCCAGGAATACCGATTGGCCGATGGAAGATGCCATTTGTGCGAGAAAGAATTCACGTATTTCGGAAATCTTGTAACGCACACGAATATGGCACATCCGAAAAATAGCTTGATTTGTGATAATTGTGGATTGACGTTTAACAAGATGAGAGACTTGAGTTTTCATTTGAGGAATTTTCATAAAGACGGAGGGCATCGCTGCGAAGAATGCTCAGAAGTATTCTCTACCCGTTATCGTTTGAATGGACACAAAAAGACATTCCATCTCAGAAGATGCAATATATGCGGTTCCCGTTTCCCTTCCTACCAACTGTTGCAGAAGCATATACAAACCGATCACCCAGACGACGGTAGTCAACAATCCTGCTCGTACTGTTCTAAAGAATGCAAAAATAAACCGAGCTTAACACAACATTTGAGATATTGCAAGATGAAAAACTTCAAAGTTACTCTACCAGCAATTCCTGAAGAGACGTTGCAACCGAAAAAAGAAAACCCGGAAAAGAAAAGGGACATAATACAGGTTAGAAAAAACATCCAATGTATTTTGAACATGTCGACAGCGATACCATTTAGATTTTTTTCGAGATTCTCCTGTTTCTATTGCTCGAAAAATTTCATTGAATTCGACGATCTCAAAATTCACGTAGTAGCCGAGCATGCTGTTTGCGATTTGAAAGATAAAAGCATGATGAAATGCAAAGGCGACAGAATAACTGTAAAAATTGACATTTCTGCGTTATCCTGCAAAGTTTGCTGCGAACACATAGACGATTTGGACAATTTAATCGACCATTTGATTACTAAACACAACGCGACTTATGACAAATCTATAACGGAATGTTTCGACGCTTTTAAAATTATCAAAGataatataccatgtaacatatgCTCGAAAGTGTTCCGATATTTCGGCACTCTATTGCGGCACATTAACTCTGAGCACAGCAAAAATAATAAGATATGCGATTTTTGTGGGCGTAGTTTTAAGAGTGTCGCCAATTTGAATATTCACAGGATCTACGCTCATACGGGATCATGTAAATGCGAGGTTTGCGGAGCGAAGTTTAAGAACCAGTGGTGTTTAGGACGGCACAAAGCCAAATGCCACAACGCGAAAGAGTTCCAATGCACGAAATGCGATGAGCGTTTCCAGTCTCAGTACCACAAGCAAAAGCATATGATTGAGGCGCACGAAATTGGACATAAATGCACATACTGTGGGAAAATGTTCACGAGGAACTCTTTCATGAAAGACCACATAAGGCGGACACATTTGAAGGAGAAGAATGTGCCTTGTTCGGTCTGCAATGAGAAGTTCTTCGACAATTATCTCTTGAAGTTGCATATGGTTAAACATAAGGGCGAGAGGAATTTCAGCTGCGAGATTTGTGGGAAGGCGTTCCTTAGACGTGCGAAATTGTGCACAATGGAGGACAAATGTAAGAAAACAGAAATGGTGCGTAAACTGATAGTGAAACGACAAAACGTAGAGTATGTCCTGGGGTACAGTAATGTTACACCCTTCATGTGGTATAAGGGGAAGTACAGGTGTTTCTATTGCACGGAACCTATGAAAGACCCTGTCATGCTGAGGGAACATACTGCTATGATGCACCAGTATGTGAATTTGGAGTTGGTAGTTTTTGACCGAACTAAAAACAATAGGAACAGAGATGCGGCGGTCAAAATTGATGTGACAGATATTTGCTGTAAGCTATGCCCTAAAGCTGTTAATAGTTTGGAACAACTTATCAATCATTTGATTATAGCTCATGATGCGGAATACGATGTGAGCGTTCCGAACTGTCTCCTTCCCTTTAAACTCGACAGGGAACAGCCTTCTTGCCCCATTTGCAATAAACAATTCGTAttcttcgagtacctacttcGTCATGCGAACAAGCACCATTTGGCTCACGACTATATTTGCGATGTGTGTGGCACAAGTTTCCAAGGCGAGAATCATTTGAAAATGCACAACAGGTACTATCACAGAGAAGGCGGATATACGTGCGACCAATGTGGCATTAATTTGGCGACGCTCTCAAAGAAAATGTTGCACGAAAAAAACGTGCACATGATCAATTTGTCCACGTGCCCCCATTGTCCGGAAACCTTCAAAAGTCCGTATTTCAAGAAGCTTCATTTGGCGAACGTACATGGTGTGGAGGAGTTGAAAATAAAATGCCCGTATTGTCCCAAAGTTTATCCCCAAGAGAGCATTATGTCCCGGCACATGAGAAGAGTCCATTTGAGAGAGAAGAACGTCGAATGTCCAGTTTGCGGGGACAAATTCTTCGGGGCCTACGACGTTAAACTGCACATGCTGAAGCATAATGGGGATAAAAAGTTCGTTTGCTCGGTCTGCGGGAAAAAGTTTTCAAAGAAGAGCAATTTGAATTCGCACATTTTGACTCATACTGGGCAGAAGAAGTACATTTGCACTGTTTGTGGGAGGGAGTTCGCTCATCGCCCAAATCTGAAGATACATTTAAGATCGTGTCATGCACAAACCGTTACGGAGCAAGGCATGAGTGTTCTCGATGATATAGATGGAGAGTTGGTGGAAATAACTAGATTAGAACTTGAAAGGGAACTAGAAGAAActgtttaa
- Protein Sequence
- MRPAKKSSANKLRRSNLQILFNNTTIIPFKWRGKYVCFYCGEDVKEYEELRQHTRGHGVCSDDNSALRQVKAADAEVKVDVSEITCNLCYEDLTNFDNTVEHLMVKHHLPYDKDVKLPIAPYRLLDLNCLLCDQKFNYLSKLVSHVNTDHPKDCLVCVECKQEFNKKRDLDAHFRTKHRNQYTCSKCCLSFSTNSELLSHKSNSHPFLCNICFKPFMSLKKCLQHIKATHLDAILKCGFCFKSSNAKAFLEHAVKCNVNSKNLNEVVLPDDNKKPTVKLIRDNIACILNMSTVVPFKYFMCEGPYETTTVRRRKNLQTLFNNTTIMPFKWRGRYQCFYCGMCYTDYPEFWKHTKSHGLCNISDNALKVTKGNNIELKIDISEIACEICYEPFANFDEIIDHLIGKHELEYDKTIDMPFQEYRLADGRCHLCEKEFTYFGNLVTHTNMAHPKNSLICDNCGLTFNKMRDLSFHLRNFHKDGGHRCEECSEVFSTRYRLNGHKKTFHLRRCNICGSRFPSYQLLQKHIQTDHPDDGSQQSCSYCSKECKNKPSLTQHLRYCKMKNFKVTLPAIPEETLQPKKENPEKKRDIIQVRKNIQCILNMSTAIPFRFFSRFSCFYCSKNFIEFDDLKIHVVAEHAVCDLKDKSMMKCKGDRITVKIDISALSCKVCCEHIDDLDNLIDHLITKHNATYDKSITECFDAFKIIKDNIPCNICSKVFRYFGTLLRHINSEHSKNNKICDFCGRSFKSVANLNIHRIYAHTGSCKCEVCGAKFKNQWCLGRHKAKCHNAKEFQCTKCDERFQSQYHKQKHMIEAHEIGHKCTYCGKMFTRNSFMKDHIRRTHLKEKNVPCSVCNEKFFDNYLLKLHMVKHKGERNFSCEICGKAFLRRAKLCTMEDKCKKTEMVRKLIVKRQNVEYVLGYSNVTPFMWYKGKYRCFYCTEPMKDPVMLREHTAMMHQYVNLELVVFDRTKNNRNRDAAVKIDVTDICCKLCPKAVNSLEQLINHLIIAHDAEYDVSVPNCLLPFKLDREQPSCPICNKQFVFFEYLLRHANKHHLAHDYICDVCGTSFQGENHLKMHNRYYHREGGYTCDQCGINLATLSKKMLHEKNVHMINLSTCPHCPETFKSPYFKKLHLANVHGVEELKIKCPYCPKVYPQESIMSRHMRRVHLREKNVECPVCGDKFFGAYDVKLHMLKHNGDKKFVCSVCGKKFSKKSNLNSHILTHTGQKKYICTVCGREFAHRPNLKIHLRSCHAQTVTEQGMSVLDDIDGELVEITRLELERELEETV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -