Oiva039402.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Oeneis ivallda
Gene Symbol
-
Assembly
GCA_029955525.1
Location
JARPMR010000026.1:15450215-15454551[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 6.5e-05 0.0066 18.3 1.6 1 23 354 376 354 376 0.98
2 22 7e-05 0.007 18.2 3.9 1 23 382 404 382 404 0.98
3 22 3.9e-08 4e-06 28.4 1.3 1 23 410 432 410 432 0.99
4 22 1.5e-05 0.0015 20.3 0.4 1 23 438 460 438 460 0.99
5 22 0.00037 0.038 15.9 2.8 1 23 466 488 466 488 0.99
6 22 0.0015 0.15 14.0 3.6 1 23 494 516 494 516 0.98
7 22 0.26 26 6.9 4.6 1 23 522 544 522 544 0.99
8 22 0.00025 0.025 16.5 5.7 1 23 550 572 550 572 0.98
9 22 0.00014 0.014 17.3 4.2 1 23 578 600 578 600 0.98
10 22 0.0014 0.15 14.1 4.2 1 23 606 628 606 628 0.95
11 22 0.00018 0.018 16.9 0.4 1 23 634 656 634 656 0.99
12 22 0.023 2.3 10.3 3.6 1 21 662 682 662 685 0.95
13 22 0.0022 0.22 13.5 2.0 1 23 691 713 691 713 0.99
14 22 0.0017 0.17 13.9 4.9 1 23 719 741 719 741 0.99
15 22 2.1e-05 0.0021 19.8 2.4 1 23 747 769 747 769 0.99
16 22 0.00013 0.013 17.4 2.0 1 23 775 797 775 797 0.98
17 22 9.5e-05 0.0096 17.8 3.4 1 23 804 826 804 826 0.97
18 22 1.4e-05 0.0015 20.3 1.2 1 23 832 854 832 854 0.98
19 22 0.014 1.4 10.9 1.8 1 23 860 882 860 882 0.98
20 22 0.0012 0.12 14.3 4.4 1 23 888 910 888 910 0.99
21 22 6.7e-06 0.00067 21.4 1.5 1 23 916 938 916 938 0.98
22 22 5.5e-05 0.0055 18.5 0.4 1 23 943 966 943 966 0.94

Sequence Information

Coding Sequence
ATGCAGTGTTCTGTGCCTAACTGCGGTAATGCAGCAAGAAAGGATTCCGAATGCCTTGGAGTAACTTTTCACAAGTTTCCTACCTCACCCCCAGAGCGCAATGCCTGGCTTCAAGCCCTCGGTGTGCCCGGATCTCGCGATCGGCGCGgcgctgtggtctgctcgcagcactTCTTAGCTGAGGACTTCTCTAAGACGAGGAGTGGATCAAAGAAAATGCGACTTGGAGCTGTTCCTTTTGTGATACACGACACACAACTGTCTGATATTAATCATAAAGCAATGGAAACAGCCAAAAATACAGAAGTTTACATTGAAACCGGCGATGAGCATACAGACAGTACTAAAATAGAAAAAGTAACTGTGAAAAAGCAAGCAAAACTAGATATTGTACACAGAGTAACTGACAGAGTTGAAGTACGAATAGAAAAAATGGACTTAAAAAACCATTCAAAAGTAAACATTGTCAATGGAGCTACTGATAATGTTGAAATAGAAATAGGAAAAGCAGAAATACCTGATGCAGTCAATGGGTCAATCCTTAAACTGGAACCTTCAGGTCAAAAGTGTTTGGAAATTTCTTATGATAAAGACTCAAGCCACAATCAGCTTTCCCAAAGCAGTTTAGAAATTAATCATTGCAGTAATGAGAATGATACACTATCTACAAATTTACATTCAGATCAAGCAATTGTATTATGTTCAGAAAGAACAGTAGAATTTAGTTCAGAACAGGCGGTTGAACTAATTTCAGAATTATGTTCAGAAAAGGTGGTTGCTTTAAGTTCAGAAAAGACTGGTGAATTAGGTTTAGAAAAGGATGTAGAATTATGTTCAGATAAGGCTGTTGAATTAAGTACAGAAGAGGTTGGCAAATTCTGTTCAGAAAAAGCTGACCAATCAAGACAAGCAGACAAGGTGGTTGATTCAAACAAACGTGGCAAACCAAGGTCCATCAATAAACATAAAGTTGAACGAAAAAAGAAATATGCATCCCTTAAAAAGACTAAACCTGGTGTTAAGTATCAGCGTACCTATAATTATAGAAAAGGGAATAAGTTCATTTGTGATTATTGTCAGGTTGTATGTAAAAGAAAGGATGGTTTGATCCTTCATATGAGAAAACATACAGGGTATAAACCATATTCATGTGAGGACTGTGAATACAAATGTACTACGAAAAGCTCTTTAACCTTACATATAAAAAAGCACACTGGAGAGAAACGTTACCAATGTGATATCTGTGGACGGAAGTTTGTGAACTCTTCCAGTCTAACTAATCACAggcgaactcacactggtgaaaaaccataTTCGTGTAAGCTATGTCCATTAAAATTTAGGCAAAGTGGCGCCTTAAAAGGTCACATGAtgactcacactggtgagaaacGATATGTTTGCAACGTATGCCAGTCTAGATTCAGGACCAGTACGTGTTTGGCAAATCATGTcagaactcacactggagaaaaaccgtATGTCTGTGACTATTGTCAGTACAAATGTGTGAAGAAATGGACCTTATTGAACCACATGCAGAAACATACAGGTGAAAAGCCTTACACTTGCAAGGTTTGTCACTCTAAGTTTGCATGGAACTGCTCTTTATACTTACACATGCGAGTGCACAATGGTGAGAAACCCTTTTCATGTCAGTATTGTCACAGTAAGTTTACCAGAAAAAGTCGTCTAAGAATACATATCCGAAGCCACACCGGTGAAAAACCTTACGCGTGTAAATTTTGCGACTACAAATGTTCGACGAGTAGTTCTCTAAGATCCCATGCGAGgactcacacaggtgaaaaaccttacCTATGTCTGCACTGCGACTATAAATGCGCTACCTCAAGCTCTCTAAGATCTCACATGACGGTTCATAGCAAGGAAAAGCCTTATTCTTGCAAGCTCTGTGACTATAGAGCTGCTCAATCGGGTGGCCTAAAGTCCCATATGAAGACTCACACTGGGGAAAAACCCTATTCTTGCGACAGGTGTCCGTACAAATGTGCTACGAAAAGCGGTTTAAGGAGTCACATTAACTGTGTACACGAGTTGATCAAGGCCTTTCGCTGTGAACAATGCGAATTCAGAACGAGTTCGAAATATGCTTTAACTGAACACAAcaggactcacactggtgaaaaaccataTTCATGCCAGCACTGTGATTACAAATGCACGGCCAAATCTGCTCTGAGAGACCACGAGAGAACGCACACTGGTATAAAGCCGTACCAATGTGAAGTTTGTTTGTCTAaattttcaacaaaaaacaatttgAAGAAGCACATGTCAACTCACACTGGGGAAACACCTTACTCTTGCAACTTATGTCAATACAAGACTGTTAGAAAAGACAGTTTAACGAGGCACGGCAGGACTCACACGGGCGGAGAGAAGCGTCACAGCTGCGACGTGTGCAGCATGGCCTTCTATGAAAAGGCCCATCTGAGGCGGCACATGAACACACACACCGGCGTTAGACCGTTCAGTTGCGAACTGTGCCCTCGCAAGTACACCACGAAACGCGGTTTAAGCGATCACATGAGAacgcacactggtgaaaaaccttactCGTGCGGGACCTGCGCATACAGGTGTACTACTTTGAATTTACTCCGGTCCCACGTCAGGgtccacactggtgaaaagccttacTCATGTACGCAGTGTGAATACAAATGCTCAAGCTCCAACTCCTTAAAAATGCACGTAAGAACacacacgggtgaaaaaccttatgcGTGTAAGATTTGTCGATACAAGTTCACGACTGCCAGTGGTCTGAGGAGCCACTTGAGGAAGCACACTGGTGAGAAATACACTTGCGATGTGTGTGACACTAAATACGTGGATAAAAGCAAATTACGAAATCACATTATTGGAACTCATAAGTTTTAG
Protein Sequence
MQCSVPNCGNAARKDSECLGVTFHKFPTSPPERNAWLQALGVPGSRDRRGAVVCSQHFLAEDFSKTRSGSKKMRLGAVPFVIHDTQLSDINHKAMETAKNTEVYIETGDEHTDSTKIEKVTVKKQAKLDIVHRVTDRVEVRIEKMDLKNHSKVNIVNGATDNVEIEIGKAEIPDAVNGSILKLEPSGQKCLEISYDKDSSHNQLSQSSLEINHCSNENDTLSTNLHSDQAIVLCSERTVEFSSEQAVELISELCSEKVVALSSEKTGELGLEKDVELCSDKAVELSTEEVGKFCSEKADQSRQADKVVDSNKRGKPRSINKHKVERKKKYASLKKTKPGVKYQRTYNYRKGNKFICDYCQVVCKRKDGLILHMRKHTGYKPYSCEDCEYKCTTKSSLTLHIKKHTGEKRYQCDICGRKFVNSSSLTNHRRTHTGEKPYSCKLCPLKFRQSGALKGHMMTHTGEKRYVCNVCQSRFRTSTCLANHVRTHTGEKPYVCDYCQYKCVKKWTLLNHMQKHTGEKPYTCKVCHSKFAWNCSLYLHMRVHNGEKPFSCQYCHSKFTRKSRLRIHIRSHTGEKPYACKFCDYKCSTSSSLRSHARTHTGEKPYLCLHCDYKCATSSSLRSHMTVHSKEKPYSCKLCDYRAAQSGGLKSHMKTHTGEKPYSCDRCPYKCATKSGLRSHINCVHELIKAFRCEQCEFRTSSKYALTEHNRTHTGEKPYSCQHCDYKCTAKSALRDHERTHTGIKPYQCEVCLSKFSTKNNLKKHMSTHTGETPYSCNLCQYKTVRKDSLTRHGRTHTGGEKRHSCDVCSMAFYEKAHLRRHMNTHTGVRPFSCELCPRKYTTKRGLSDHMRTHTGEKPYSCGTCAYRCTTLNLLRSHVRVHTGEKPYSCTQCEYKCSSSNSLKMHVRTHTGEKPYACKICRYKFTTASGLRSHLRKHTGEKYTCDVCDTKYVDKSKLRNHIIGTHKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-