Oiva032039.1
Basic Information
- Insect
- Oeneis ivallda
- Gene Symbol
- -
- Assembly
- GCA_029955525.1
- Location
- JARPMR010000021.1:17168996-17171197[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-06 0.00083 20.5 0.0 4 40 19 55 18 59 0.88 2 2 0.11 23 6.3 0.0 27 41 476 490 476 492 0.89
Sequence Information
- Coding Sequence
- ATGTCAAGTGGAATGAAAATATCAGTTCGTAAGAAACTGAATTACAACATAAATGATCTACAAGTCGCATTAAAAGAAATAGAAGATGGGAGATTAAAAATTAGGGAAgcatcaaaaaaatataatattcctCGAGGTACACTCCAGGACCGAATTCATGGAAGATCTAAAACTAACAGTGTCAGACTCGGCAGAAATAGTGTGTTAACCACCAAAGAAGAAGAGTGCATGGAGCTGTGGCTAGTAAATTTAGCAAAATGCGGGTTCCCTCGAAAACGTAATGATTTACAAAATACAGTACAGAACATTATTAAGGAAGATCAAAGACCAACACCTTTCGTTGATCAACGGCCAGGACGAAGATGGTGTGAAGCATTTCTGAAACGTCATCCTGTACTAAACGAACGTATTCCCGAAGGTATTACAAAAGCACGAGCTATAGTAACAGAAGAGTATATAAGAAAATGGTTCCGAGAGATGAAAGCATATTTGAGCAATATAAATGCTACAGATATACTTGAAGATCCCACGCGCATATTAAACGGAGACGAAACAAGTTTTAGTTTATGTCCGAAGACTGGGAAAGTAATTGCACCAAAGGGATGGAAAAATTGTTATGAAATAAAACCAGGCAGCGAAAAAGAGACGATCACAGTACTGCTGGTTTTTTCGGCTGCTGGTGAAACTGTGGTTCCGATGGTGGTATTCCCGTACGTGCGTCCACCTAAAGAGGTGATTGATAGCATACCCCCAAACTGGTTCCTTGGGCGATCTGAATCCGGGTGGATGAAAAGCGATATATTTTTCGAATATGTAGCCAATGGTGTTAACAACTGGTTAATCGAAAAAGAGATAAAAAAACCAGTTCTCCTTTTGGTAGATGGACACAAATCCCATTTAACGATGGCACTCAGTGAATTTTGTGACAGTAATGGCATTATACTATATGCCTTGCCTGCGAACACTACGCACATTTTACAGCCAGCAGACGTAAGCGTATTCCGGCCATTAAAAGTGGAATGGCGAAAAACTGTAAAAGAATGGCAACACAAGGAAGAAAACTTTAATCGATCTCTTACGAAAGCTACATTTTGTCCTCTGTTGGAGCAAGTATTAGAAAAAGATATGACACAATCCATAAAAAACGGGTTTAGAAAATGTGGCCTATATCCTTTTAATCCAGATGCTGTTGATTATACAAAATGTGTCATGGACacaatagaaaattttgaaaaagataTTATTGGGCAGGGTGATATAGACACAACAATAAAAGTTTTAGaatatttcaaaaaatcattaTCAGAAAACGGAATTGATATTAAACAAATTATCAAAATTATAAAAGAATCTCCTTCGAATGAAAGAGATAATATTAACGATACAGTGTTAGACCAAAGAACTGCTTTAAATGAACTTGATATAAATATACCCACAACAACCTTACAAAGACACGCTCAAGAAAATATCACAGATTGTAATACAATAGAGAATTATATAGTCGACTCGGAAGGAATTTTATTAATAGAGCccgaaaaaaatgatttttctttAAGTGAAAGCTTATTAAAAACCATTGACGTAGCTAGTGATTTCAGTTTTTCACTGCTGGAAAATCCTACTCGCCCAACCTCTGCTGCATCGTCAACATCCAGTAAAAGTTACCAAATAAGATCTGGATCCAACACGCCGACCAATAGAGGTGGGGTATCGCCCTATTTCAGAAAACACTTATTTACACCTAAAAGCTTAATTTTTTCgaaaaaaagaacaaaagaaAATCTTCCATCTGCGATTTCGGCACAGTCTTGGCGAGATATTATGGAGCAGAAAAACAAAGCTAAACAAGAACTAGACAAAAAGAAACTGGAAAgacaaaataaacttaaattacTGAGAGAAAAGAAGGCTAaaaagaaagaggaattgatcAGAAAAAGAGCTGAAGCAGCTGCCAAAAAAGCTAAACAGATCAAAAAATCCATGAAACTTATGAAAGAACCACCTTCAGCAACGCAATCTCACATCAAATGTGTTGGGTGTGAAGAAGATTTAATCAGTGATGTAGAAGATGATGATCTTAAGAATATAGGATGTGACAAATGCCCAAGATGGTTTCACCTTAAATGTACAGTTCACCGTGGTAGACTATACTCAGAAGTTGCCAAAGAAGATTTTATATGCCATGTTTGCTATGTGTAA
- Protein Sequence
- MSSGMKISVRKKLNYNINDLQVALKEIEDGRLKIREASKKYNIPRGTLQDRIHGRSKTNSVRLGRNSVLTTKEEECMELWLVNLAKCGFPRKRNDLQNTVQNIIKEDQRPTPFVDQRPGRRWCEAFLKRHPVLNERIPEGITKARAIVTEEYIRKWFREMKAYLSNINATDILEDPTRILNGDETSFSLCPKTGKVIAPKGWKNCYEIKPGSEKETITVLLVFSAAGETVVPMVVFPYVRPPKEVIDSIPPNWFLGRSESGWMKSDIFFEYVANGVNNWLIEKEIKKPVLLLVDGHKSHLTMALSEFCDSNGIILYALPANTTHILQPADVSVFRPLKVEWRKTVKEWQHKEENFNRSLTKATFCPLLEQVLEKDMTQSIKNGFRKCGLYPFNPDAVDYTKCVMDTIENFEKDIIGQGDIDTTIKVLEYFKKSLSENGIDIKQIIKIIKESPSNERDNINDTVLDQRTALNELDINIPTTTLQRHAQENITDCNTIENYIVDSEGILLIEPEKNDFSLSESLLKTIDVASDFSFSLLENPTRPTSAASSTSSKSYQIRSGSNTPTNRGGVSPYFRKHLFTPKSLIFSKKRTKENLPSAISAQSWRDIMEQKNKAKQELDKKKLERQNKLKLLREKKAKKKEELIRKRAEAAAKKAKQIKKSMKLMKEPPSATQSHIKCVGCEEDLISDVEDDDLKNIGCDKCPRWFHLKCTVHRGRLYSEVAKEDFICHVCYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -