Oiva014562.1
Basic Information
- Insect
- Oeneis ivallda
- Gene Symbol
- -
- Assembly
- GCA_029955525.1
- Location
- JARPMR010000009.1:20772397-20776954[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-08 3.5e-06 28.1 0.0 2 45 44 87 43 87 0.91 2 2 5.2e-08 1.1e-05 26.5 0.0 2 39 116 153 115 159 0.89
Sequence Information
- Coding Sequence
- ATGTACAATACATACGTACTCGTCAACAACGTCGTACAAAGCACAGTCGAAAGAAAAATCCGGCATAAAGGTCTACTTACACAACTTTTAGAAACAATTCAGAAAAAAACTAAGCGTGCTGCGTGGTCGCAAGAAAATTTAGAGAAAGCAATGCGAGCGGTTAAAGAGAAACAGTTAACACAAGCAACTGCGGGGCTGCGATACGGCATACCACGCACAACACTCTTTGATCATTTGAAATCAGGAAGCGCGGTCAAACGCACGGGACGAAAGCCTGTATTGAATGAAAAGCAAGAAAAACTTTTAGAAACAATTCAGAAAAAACCTAAGCGTGCTGCGTGGTCGCAAGAAAATTTACAGAAGGCAATGCGAGCGGTTAAAGAGAAACAGTTAACACAAACAACTGCGGGGCTGCGATACGGCATACCTCGCACAACACTCTTTCATCATTTGAAATCAGGAAGCGTGGTCAAACGCACGGGACGAAAGCCTGTATTGAATGAAAAGCAAGAAACGGGCATTAAAGAGAGCGACAAAATAAAGTTCGATGTGACGAAGTTCGGCAACCCTACGATCTCTTGGGGGAATTACCGGTTTGTTAAGAAGCTGAATCGAAGATTAAAGACTTGGTGGGAATGTACTGCCAGGAAGAGTAAGGGTTGTCGCTGTGTTGCTGTTACCGTCGAAAATCGTCTCGTGAAGTTAAATGGGTGGCATAATCATTAA
- Protein Sequence
- MYNTYVLVNNVVQSTVERKIRHKGLLTQLLETIQKKTKRAAWSQENLEKAMRAVKEKQLTQATAGLRYGIPRTTLFDHLKSGSAVKRTGRKPVLNEKQEKLLETIQKKPKRAAWSQENLQKAMRAVKEKQLTQTTAGLRYGIPRTTLFHHLKSGSVVKRTGRKPVLNEKQETGIKESDKIKFDVTKFGNPTISWGNYRFVKKLNRRLKTWWECTARKSKGCRCVAVTVENRLVKLNGWHNH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -