Oiva014559.1
Basic Information
- Insect
- Oeneis ivallda
- Gene Symbol
- -
- Assembly
- GCA_029955525.1
- Location
- JARPMR010000009.1:20745151-20751463[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.7e-07 7.5e-05 23.8 0.0 10 44 2 37 1 38 0.87 2 4 3.6e-11 7.3e-09 36.7 0.1 2 41 83 123 82 127 0.86 3 4 8.5e-11 1.7e-08 35.5 0.1 2 41 172 212 171 216 0.86 4 4 3e-05 0.006 17.7 0.0 2 38 257 293 256 298 0.88
Sequence Information
- Coding Sequence
- ATGGCGGCGGTAAAAAAAGGTCACCTCACAACGAATAAAGCAGCTTGTTGGTTTGATATTCCTAGACGTACATTACTGGATTATTTGAAGTCGGGCAGTAGTGCTGTTAAACGCTCTGGACGAAGAACTGTATTAAGCGAAGATCATCAGCAAGAATTGGTTAATAGGATACTGGAAAAAGCTAAACAAGGCACGACTATCACAAGAAAGTTAATTAAAAGGCGTAGACGATACGCACAGTGGTCGCGAGAAAGTCTTGTTGCGGCCATGGCGGCGGTGAAAAAAGGTCATCTCACAACGAATAAAGCAGCTTCTTGGTTTGATATTCCTAGACGTACATTACTCAATTATTTGAAGTCGGGCAGTAGTGCTGTTAAACGCTATGGACGAAGAAATGCATTGAGTGAAGATCAACAACGAGAATTTGTTAATAGGATACTGGAAAAAGCTAAAAATGGCACGACTATCACAAGAAAGTTAATTAAAAGGCGTAGACGATACGCACAGTGGTCGCGAGAAAGTCTTGTTGCGGCCATGGCGGCGGTGAAAAAAGGTCATCTCACAACGAATAAAGCAGCTTCTTGGTTTGATATTCCTAGACAAACATTACTCAATTATTTGAAGTCGGGCAGTAGTGCTGTTAAACGCTATGGACGAAGAAATGCATTGAGTGAAGATCAACAACGAGAATTTGTTAATAGGATACTGGAAAAAGCTAAAAATGGCACGACTATTACAAAAATAAGGCGTAAACGTGCTACTTGGTCGCAAGATGATCTAGAAAAGGCGATGCGAGCGGTAGAAAAGGGCCAGTCAACACAAATAGCTGTTGCGAGGCGATATGGTATACCGATACAAACACTGCGCGATCATTTGAAATCAGGAAGCAAGATTAAAAGCATTGGACctatcacaaAGACAAAAATTATTGACACGGCAAAACTAGCATGTCTCCTTAAATGGCGTTGGGCCGGCCATATAGCCCGAGCAAATGACGAGCGTTGGACGGAAAAGCTGCTGCACTGGTGGCCGCGCGGCGAGCGCAGACCGAGAGGTCGGCCGCGGCGCCGCTGGCGCGACGACATCACCGAGGCGGCGGGGACCACCTGGACGAGACTGGCGAGAGACAGAGCAGTGTGGAAAaggatggaggaggcctatgcccaAAAATAG
- Protein Sequence
- MAAVKKGHLTTNKAACWFDIPRRTLLDYLKSGSSAVKRSGRRTVLSEDHQQELVNRILEKAKQGTTITRKLIKRRRRYAQWSRESLVAAMAAVKKGHLTTNKAASWFDIPRRTLLNYLKSGSSAVKRYGRRNALSEDQQREFVNRILEKAKNGTTITRKLIKRRRRYAQWSRESLVAAMAAVKKGHLTTNKAASWFDIPRQTLLNYLKSGSSAVKRYGRRNALSEDQQREFVNRILEKAKNGTTITKIRRKRATWSQDDLEKAMRAVEKGQSTQIAVARRYGIPIQTLRDHLKSGSKIKSIGPITKTKIIDTAKLACLLKWRWAGHIARANDERWTEKLLHWWPRGERRPRGRPRRRWRDDITEAAGTTWTRLARDRAVWKRMEEAYAQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -