Basic Information

Gene Symbol
stc
Assembly
GCA_949316235.1
Location
OX438749.1:18485344-18505833[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2 3.5e+04 -4.3 1.6 15 19 443 447 442 447 0.81
2 14 0.013 2.2e+02 2.9 1.5 2 10 475 483 475 483 0.94
3 14 0.0007 12 6.9 20.0 4 19 491 506 489 506 0.93
4 14 2 3.4e+04 -4.1 1.2 6 10 532 536 532 536 0.96
5 14 1.1e-08 0.00019 22.3 12.7 1 18 542 559 542 560 0.98
6 14 0.00051 8.8 7.4 20.3 1 18 601 618 601 619 0.98
7 14 5.3e-05 0.92 10.5 11.0 1 19 660 682 660 682 0.87
8 14 2 3.5e+04 -5.2 2.2 6 10 712 716 712 716 0.94
9 14 0.0032 55 4.8 7.4 1 11 722 732 722 733 0.95
10 14 0.056 9.7e+02 0.8 0.6 4 10 737 743 736 743 0.92
11 14 3.6e-06 0.062 14.3 14.0 3 19 751 767 749 767 0.92
12 14 0.00064 11 7.1 11.0 10 18 814 822 811 823 0.92
13 14 5.2e-08 0.0009 20.1 14.2 1 17 859 877 859 882 0.86
14 14 0.00024 4.2 8.4 5.3 1 13 889 900 889 901 0.95

Sequence Information

Coding Sequence
ATGTCGCAGTGGAACAACTCATACGCTTATAATAATCAGTATCTTGGTGCTAGCACTTGGAACAGTGATGCCAGTGGCCAGTACATGAATCAGGCATATTACTCCAACCCTTCAAACCAATACGTCAGCTTTGACGAGTTCCTGTCCCAGATGCAGAGCACCAACGTGCCCGCGGCCAATACTGGCACCTACAACAACATACAGTATCAAAATTTTCCTTCTAACCAGTACAGATACCAAAATATCCCATCAACCTCGCAAAACCCACAAGTTGATTCATATAACTATGGGCCAAATACACCCAGTGCTACTAATGAAGAAGCCTATCAGCCACAAACCCAGTATAGTGCAGCACTAGCAGACCCAACTACTTATACAAATGATGTGGTGTTCAAATCTAATCTAACAGCAACTGCGACTGAGTTTGTGCCTAAGAGTAGTATAAAGACTTCTTCTAGTACTCAAAATGTTCAGTTAGACCCTTCGAGCACATACAATGGTATAAAGGAGTCTAGAAGCATTCATGGTAGTTCATCTGATAAGAATTGGAGGGATCGGCCTCAGTCTTCCCAACCAAGTAGTTCCCATAAAGAAACACATAGGCATAATGATTCAAATAGatttgaaacaaataatagttctaataataaaaattatgatgcAAATAACCATAGTCGAGATACCAATACCCGCAGCTATGAGTCCAATAATTGGAATCAAGAATCAAGCAACCGTAATCAAGAAAGTGGGAACCGCAACTATGAATCTAGCAGTAGTCGTAACTTTGATAATAGCCGAAATCAAGACTGCAATGTCCGTAACAATGAATTCAGTAGTCGCTATAATGAAAACAGGGGTCAAGCAAAACCTAGCAAGTCAAAGAATAAAGACTCTGAACGTACTTTCTACAATAGTTCCATCAACAAAGGGAGTCAAGATGTGAGAAGTGTTAGGGAGATAGACAGAAGAAAAAATTGGGGGGGAAGCCAGAGACTGAGGCCTGCCGAAAGGAATTTTGCTGAAGATGAGCAGTATGCTAATAGTTATCTTCAGTATAGAGAGGAGAGAACAGAAAGACCAGCTAAGGAGGTGTCCAGTCCAGTAAAGACAAAGAGACCAGTACCAGAATTGGGAGCATACACAGAGATGACTCAACGTGAGCGCCTTAGCGAACAACTGGATAAAGGTACTCTGGAGTGCTTAGTGTGTTGTGAACGCgtcaaacagacagacacagtGTGGTCCTGCACCAACTGCTACCATGTTCTGCATTTACGCTGCATCAGGAAATGGGCGATGAGCAGTATAGTTGATGGCAAATGGCGTTGTCCAGCATGTCAGAACACCAGTGATGAAGTCCCAATGGAGTACAAATGCATGTGCGGCGCGGTCCGCTCTCCTGACTATGTCCGTGGCGCGAACGGCGCCCACACCTGCGGGAAGCCATGCAAGCGGCCGAGAATCTGTCCACACCCTTGCCCGCTACGCTGCCACCCTGGACCCTGCCCACCTTGCCAGTCTACTATTACCAAACAATGCGGCTGCGGTGCAGAATCGCGGGCCGTTGTATGCAGCAATAAGGCACCTCAAGTGTGCGAGCGCACCTGTCTCCGCATTCTGGCGTGCGGCACACACAAGTGTGCACAGTCCTGCCACGAGGGCGAGTGCCTGCCCTGCGCCGAGACTGTCGAACAAGTATGCTACTGCCAAGCGGCGAAGTCTCGCATGGTCCCGTGCACTGCGGAGAGCGGCGCATGCGCGGCGTGGGCGTGCGGCGACACGTGCTCGCGGGTGCTGCGCTGCGGGGCGCACTGCTGCAAGCGGGCCTGCCACCCGCCGCCCTGCCCGCCCTGCGACCTGCTGCCCGACACGGTCACCACCTGCCCCTGCGGACACACCCAACTGGAAGTCGGCAACCGTACGGCGTGCACGGACCCTATACCACTTTGCGGGAACATTTGCGTCAAACCGCTTCCTTGCGGTCCCGCCGGCGACAAGCACTTCTGCAAACTCGACTGCCATGAAGGCAAATGTCCGGTGTGCCCCGACAAGACTCTACTGCCGTGCCGCTGCGGCCACTCCAGCCGCGAGGTACCCTGCGAGGACCTGCCTCAGATGTACAATAACGTGCTCTGCCAGAAGAAATGTAACAAGAAGCTGTCCTGCGGTCGTCACCGCTGTCGCACGGTATGCTGTGCAGCGCAGTCGCATCGCTGCGCCGTGGTGTGTGCCCGCACGCTGTCCTGCCAACTGCATCGCTGCGAGGAGTTCTGCCACACCGGGCACTGTGCGCCCTGCCCCCGCGTCAGTTTCGAGGAGCTGCGCTGCGAGTGCGGCGGCGAGGTGGTGCTGCCGCCGGTGCGGTGCGGCACCAAGCCGCCGCTGTGCCTGGCGCCGtgccgccgcccgcgcccctGCCGCCACCCGCCGCACCACTCCTGCCACACCGGGCCCTGCCCGCCCTGCGTCGTGCTCACCACCAAGATGTGCCACGGCCGCCACGAGGAGAGGAAGACGATACCCTGTTCTCAAGATGAGTTCTCGTGCGGTCTTCCGTGCGGTAAGCCGCTTCCCTGCGGCAAACACACTTGCATCAAGACCTGTCACAAGGGACCATGTGACACTGGCAAATGCACCCAGCCGTGCGCGGAGAAGCGACCGAGTTGCGGGCACCCGTGCGCCGCGGCGTGCCACTCTGGCGCGGGGGGTGCGGGGGGCGcggcgggggaggggggcgagGGGAGCACGTGCCCGAGCGCGGCGCCGTGCCGCCGCCTCGTGCGCGCCACGTGTCCCTGCGCGCGCCGGCACGCGGACCGCCCCTGCTACGAGAACGCGCGCGACCGAGCCAGAATAATGAGTACATTGGCAGCGACCAAGTTACATGAGGGTGGGTCTGTTGATCTGTCTGATGTGCAGCGTCCAAGCGCCATGCTTAAAACGCTAGAATGCGACGACGAATGCCGAGTAGAGGCTCGCACGCGTCAACTGGCGCTGGCGCTACAGATCCGCAATCCCGATGTCAGCGCTAAGTTAGCGCCGCGCTATAGCGACCACCTGCGCAACACGGCTGCCAAGGAGCCGGCCTTCGCGCAGCAGACCCACGACCGCCTCACGGAGCTGGTGCAACTCGCCAAGAAGTCTAAGCAGAAGACTCGGTCGCACTCGTTCCCTTCCATGAACTGGCAGAAGCGTCAGTTCATACACGAGCTGTGCGAACACTTCGGCTGCGAGAGCGTGGCCTACGACGCGGAGCCTAATCGAAACGTCGTCGCCACCGCCGACAAGGAGAAGTCGTGGTTGCCGGCGATGAGTGTGTTGGAGGTGCTGGCGCGGGAAGCGGGCAAGCGGCGGGTGCCCGGGCCCATCCTGCGGGCCCCGCCCGCGCCTGCCGGCGGGCCGCTAGCTCCACCCGCCGCCAAGTCCGGCTGGGCAACGCTGACATCGACAAACGCGTGGGCGGCACGCAGCAGCTCCAAGGTCAGCCAGCCGGCGCCCGCGCATCCTTCCGAGAAGATAGACTACTTCGACAACCCGCCCGACAACTAA
Protein Sequence
MSQWNNSYAYNNQYLGASTWNSDASGQYMNQAYYSNPSNQYVSFDEFLSQMQSTNVPAANTGTYNNIQYQNFPSNQYRYQNIPSTSQNPQVDSYNYGPNTPSATNEEAYQPQTQYSAALADPTTYTNDVVFKSNLTATATEFVPKSSIKTSSSTQNVQLDPSSTYNGIKESRSIHGSSSDKNWRDRPQSSQPSSSHKETHRHNDSNRFETNNSSNNKNYDANNHSRDTNTRSYESNNWNQESSNRNQESGNRNYESSSSRNFDNSRNQDCNVRNNEFSSRYNENRGQAKPSKSKNKDSERTFYNSSINKGSQDVRSVREIDRRKNWGGSQRLRPAERNFAEDEQYANSYLQYREERTERPAKEVSSPVKTKRPVPELGAYTEMTQRERLSEQLDKGTLECLVCCERVKQTDTVWSCTNCYHVLHLRCIRKWAMSSIVDGKWRCPACQNTSDEVPMEYKCMCGAVRSPDYVRGANGAHTCGKPCKRPRICPHPCPLRCHPGPCPPCQSTITKQCGCGAESRAVVCSNKAPQVCERTCLRILACGTHKCAQSCHEGECLPCAETVEQVCYCQAAKSRMVPCTAESGACAAWACGDTCSRVLRCGAHCCKRACHPPPCPPCDLLPDTVTTCPCGHTQLEVGNRTACTDPIPLCGNICVKPLPCGPAGDKHFCKLDCHEGKCPVCPDKTLLPCRCGHSSREVPCEDLPQMYNNVLCQKKCNKKLSCGRHRCRTVCCAAQSHRCAVVCARTLSCQLHRCEEFCHTGHCAPCPRVSFEELRCECGGEVVLPPVRCGTKPPLCLAPCRRPRPCRHPPHHSCHTGPCPPCVVLTTKMCHGRHEERKTIPCSQDEFSCGLPCGKPLPCGKHTCIKTCHKGPCDTGKCTQPCAEKRPSCGHPCAAACHSGAGGAGGAAGEGGEGSTCPSAAPCRRLVRATCPCARRHADRPCYENARDRARIMSTLAATKLHEGGSVDLSDVQRPSAMLKTLECDDECRVEARTRQLALALQIRNPDVSAKLAPRYSDHLRNTAAKEPAFAQQTHDRLTELVQLAKKSKQKTRSHSFPSMNWQKRQFIHELCEHFGCESVAYDAEPNRNVVATADKEKSWLPAMSVLEVLAREAGKRRVPGPILRAPPAPAGGPLAPPAAKSGWATLTSTNAWAARSSSKVSQPAPAHPSEKIDYFDNPPDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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