Oqua031324.1
Basic Information
- Insect
- Oegoconia quadripuncta
- Gene Symbol
- -
- Assembly
- GCA_949316235.1
- Location
- OX438760.1:17863626-17869317[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0025 0.23 12.9 0.0 1 23 156 178 156 178 0.92 2 17 0.61 57 5.4 0.0 1 23 184 206 184 206 0.92 3 17 3.8 3.5e+02 2.9 0.1 3 10 214 221 212 225 0.90 4 17 1.4 1.3e+02 4.2 0.0 2 23 310 331 309 331 0.91 5 17 3.8 3.5e+02 2.9 0.1 3 10 339 346 337 350 0.90 6 17 1.4 1.3e+02 4.2 0.0 2 23 435 456 434 456 0.91 7 17 3.8 3.5e+02 2.9 0.1 3 10 464 471 462 475 0.90 8 17 1.4 1.3e+02 4.2 0.0 2 23 560 581 559 581 0.91 9 17 3.8 3.5e+02 2.9 0.1 3 10 589 596 587 600 0.90 10 17 1.4 1.3e+02 4.2 0.0 2 23 685 706 684 706 0.91 11 17 3.8 3.5e+02 2.9 0.1 3 10 714 721 712 725 0.90 12 17 1.4 1.3e+02 4.2 0.0 2 23 810 831 809 831 0.91 13 17 3.8 3.5e+02 2.9 0.1 3 10 839 846 837 850 0.90 14 17 1.4 1.3e+02 4.2 0.0 2 23 935 956 934 956 0.91 15 17 3.8 3.5e+02 2.9 0.1 3 10 964 971 962 975 0.90 16 17 1.4 1.3e+02 4.2 0.0 2 23 1060 1081 1059 1081 0.91 17 17 3.8 3.5e+02 2.9 0.1 3 10 1089 1096 1087 1100 0.90
Sequence Information
- Coding Sequence
- ATGTCAGGAGCCGTGTTGAAGGTTGAGACGGAGGTGGAGACTTGCAGCATATGTGGTGCGGGCGGCGATTTGCTCACCCCTGAGGAGCACGATGCGTCTGCGGCGCCCATGCAGACCTCGATGAGGTCTATGCTCCTGCATCTCAACAACAACAAGGTGGTGCCGGAGGGGCGGCTGTGCGCGGCGTGCGGGCGGCGCGCGGCCGCGGCCTACGAGTTCAGCGCGGCGCTGGCGGCGCGCGCCGCCCCCCCCCTCAGCGACAAGATCCGCGCGCTGCGGCGCCGCCTGCACCACCTCACGCAGCGGATCGACGTGTTCATCGTGGTGGGCGGGCCCGGCGCAGGCGCGGGGAATGCGTACAGCGAGGACGACATCATCATGGTGGAGAAGGACGCGCTGGCGGCGGCCACGGCGgccgacgacgacgacctgGAGCATACCAAGAATGCTAAGGGTGATACTGTGTATCAATGCTCTGTATGCCCCTTGTCATTCCAGCGCGCGGCCGAGTACCGGGCGCACGGCGCGGCGCACGGGCCCGGCGCGCGGCACTCGTGCTGGACGTGCGGGGCGCAGCTCGCCAGCCGCGCCGCCCTGCGGGACCACGCCGCCGCACACGCCGCGCCCAGCCTCACCGCCTGCCACCTCTGCGGGACCACCTTCCAGGTACGGCCCTCTCGTGCTGGACGTGCGGGGCGCAGCTCGCCAGCCGCGCCGCCCTGCGGGACCACGCCGCCGCACACGCCGCGCCCAGCCTCACCGCCTGCCACCTCTGCGGGACCACCTTCCAGGTACGGCCCTCTCGTGCTGGACGTGCGGGGCGCAGCTCGCCAGCCGCGCCGCCCTGCGGGACCACGCCGCCGCACACGCCGCGCCCAGCCTCACCGCCTGCCACCTCTGCGGGACCACCTTCCAGGTACGGCCCTCTCGTGCTGGACGTGCGGGGCGCAGCTCGCCAGCCGCGCCGCCCTGCGGGACCACGCCGCCGCACACGCCGCGCCCAGCCTCACCGCCTGCCACCTCTGCGGGACCACCTTCCAGGTACGGCCCTCTCGTGCTGGACGTGCGGGGCGCAGCTCGCCAGCCGCGCCGCCCTGCGGGACCACGCCGCCGCACACGCCGCGCCCAGCCTCACCGCCTGCCACCTCTGCGGGACCACCTTCCAGGTACGGCCCTCTCGTGCTGGACGTGCGGGGCGCAGCTCGCCAGCCGCGCCGCCCTGCGGGACCACGCCGCCGCACACGCCGCGCCCAGCCTCACCGCCTGCCACCTCTGCGGGACCACCTTCCAGGTACGGCCCTCTCGTGCTGGACGTGCGGGGCGCAGCTCGCCAGCCGCGCCGCCCTGCGGGACCACGCCGCCGCACACGCCGCGCCCAGCCTCACCGCCTGCCACCTCTGCGGGACCACCTTCCAGGTACGGCCCTCTCGTGCTGGACGTGCGGGGCGCAGCTCGCCAGCCGCGCCGCCCTGCGGGACCACGCCGCCGCACACGCCGCGCCCAGCCTCACCGCCTGCCACCTCTGCGGGACCACCTTCCAGGTACGGCCCTCTCGTGCTGGACGTGCGGGGCGCAGCTCGCCAGCCGCGCCGCCCTGCGGGACCACGCCGCCGCACACGCCGCGCCCAGCCTCACCGCCTGCCACCTCTGCGGGACCACCTTCCAGGTACGGCCCTCTCGTGCTGGACGTGCGGGGCGCAGCTCGCCAGCCGCGCCGCCCTGCGGGACCACGCCGCCGCACACGCCGCGCCCAGCCTCACCGCCTGCCACCTCTGCGGGACCACCTTCCAGGTACGGCCCTCTCGTGCTGGACGTGCGGGGCGCAGCTCGCCAGCCGCGCCGCCCTGCGGGACCACGCCGCCGCACACGCCGCGCCCAGCCTCACCGCCTGCCACCTCTGCGGGACCACCTTCCAGGTACGGCCCTCTCGTGCTGGACGTGCGGGGCGCAGCTCGCCAGCCGCGCCGCCCTGCGGGACCACGCCGCCGCACACGCCGCGCCCAGCCTCACCGCCTGCCACCTCTGCGGGACCACCTTCCAGGTACGGCCCTCTCGTGCTGGACGTGCGGGGCGCAGCTCGCCAGCCGCGCCGCCCTGCGGGACCACGCCGCCGCACACGCCGCGCCCAGCCTCACCGCCTGCCACCTCTGCGGGACCACCTTCCAGGTACGGCCCTCTCGTGCTGGACGTGCGGGGCGCAGCTCGCCAGCCGCGCCGCCCTGCGGGACCACGCCGCCGCACACGCCGCGCCCAGCCTCACCGCCTGCCACCTCTGCGGGACCACCTTCCAGGTACGGCCCTCTCGTGCTGGACGTGCGGGGCGCAGCTCGCCAGCCGCGCCGCCCTGCGGGACCACGCCGCCGCACACGCCGCGCCCAGCCTCACCGCCTGCCACCTCTGCGGGACCACCTTCCAGGTACGGCCCTCTCGTGCTGGACGTGCGGGGCGCAGCTCGCCAGCCGCGCCGCCCTGCGGGACCACGCCGCCGCACACGCCGCGCCCAGCCTCACCGCCTGCCACCTCTGCGGGACCACCTTCCAGGTACGGCCCTCTCGTGCTGGACGTGCGGGGCGCAGCTCGCCAGCCGCGCCGCCCTGCGGGACCACGCCGCCGCACACGCCGCGCCCAGCCTCACCGCCTGCCACCTCTGCGGGACCACCTTCCAGGTACGGCCCTCTCGTGCTGGACGTGCGGGGCGCAGCTCGCCAGCCGCGCCGCCCTGCGGGACCACGCCGCCGCACACGCCGCGCCCAGCCTCACCGCCTGCCACCTCTGCGGGACCACCTTCCAGGTACGGCCCTCTCGTGCTGGACGTGCGGGGCGCAGCTCGCCAGCCGCGCCGCCCTGCGGGACCACGCCGCCGCACACGCCGCGCCCAGCCTCACCGCCTGCCACCTCTGCGGGACCACCTTCCAGGTACGGCCCTCTCGTGCTGGACGTGCGGGGCGCAGCTCGCCAGCCGCGCCGCCCTGCGGGACCACGCCGCCGCACACGCCGCGCCCAGCCTCACCGCCTGCCACCTCTGCGGGACCACCTTCCAGGTACGGCCCTCTCGTGCTGGACGTGCGGGGCGCAGCTCGCCAGCCGCGCCGCCCTGCGGGACCACGCCGCCGCACACGCCGCGCCCAGCCTCACCGCCTGCCACCTCTGCGGGACCACCTTCCAGGTACGGCCCTCTCGTGCTGGACGTGCGGGGCGCAGCTCGCCAGCCGCGCCGCCCTGCGGGACCACGCCGCCGCACACGCCGCGCCCAGCCTCACCGCCTGCCACCTCTGCGGGACCACCTTCCAGGTACGGCCCTCTCGTGCTGGACGTGCGGGGCGCAGCTCGCCAGCCGCGCCGCCCTGCGGGACCACGCCGCCGCACACGCCGCGCCCAGCCTCACCGCCTGCCACCTCTGCGGGACCACCTTCCAGGTACGGCCCTCTCGGCATATATGTGCAAGTTTGA
- Protein Sequence
- MSGAVLKVETEVETCSICGAGGDLLTPEEHDASAAPMQTSMRSMLLHLNNNKVVPEGRLCAACGRRAAAAYEFSAALAARAAPPLSDKIRALRRRLHHLTQRIDVFIVVGGPGAGAGNAYSEDDIIMVEKDALAAATAADDDDLEHTKNAKGDTVYQCSVCPLSFQRAAEYRAHGAAHGPGARHSCWTCGAQLASRAALRDHAAAHAAPSLTACHLCGTTFQVRPSRAGRAGRSSPAAPPCGTTPPHTPRPASPPATSAGPPSRYGPLVLDVRGAARQPRRPAGPRRRTRRAQPHRLPPLRDHLPGTALSCWTCGAQLASRAALRDHAAAHAAPSLTACHLCGTTFQVRPSRAGRAGRSSPAAPPCGTTPPHTPRPASPPATSAGPPSRYGPLVLDVRGAARQPRRPAGPRRRTRRAQPHRLPPLRDHLPGTALSCWTCGAQLASRAALRDHAAAHAAPSLTACHLCGTTFQVRPSRAGRAGRSSPAAPPCGTTPPHTPRPASPPATSAGPPSRYGPLVLDVRGAARQPRRPAGPRRRTRRAQPHRLPPLRDHLPGTALSCWTCGAQLASRAALRDHAAAHAAPSLTACHLCGTTFQVRPSRAGRAGRSSPAAPPCGTTPPHTPRPASPPATSAGPPSRYGPLVLDVRGAARQPRRPAGPRRRTRRAQPHRLPPLRDHLPGTALSCWTCGAQLASRAALRDHAAAHAAPSLTACHLCGTTFQVRPSRAGRAGRSSPAAPPCGTTPPHTPRPASPPATSAGPPSRYGPLVLDVRGAARQPRRPAGPRRRTRRAQPHRLPPLRDHLPGTALSCWTCGAQLASRAALRDHAAAHAAPSLTACHLCGTTFQVRPSRAGRAGRSSPAAPPCGTTPPHTPRPASPPATSAGPPSRYGPLVLDVRGAARQPRRPAGPRRRTRRAQPHRLPPLRDHLPGTALSCWTCGAQLASRAALRDHAAAHAAPSLTACHLCGTTFQVRPSRAGRAGRSSPAAPPCGTTPPHTPRPASPPATSAGPPSRYGPLVLDVRGAARQPRRPAGPRRRTRRAQPHRLPPLRDHLPGTALSCWTCGAQLASRAALRDHAAAHAAPSLTACHLCGTTFQVRPSRAGRAGRSSPAAPPCGTTPPHTPRPASPPATSAGPPSRYGPLGIYVQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -