Oqua011200.1
Basic Information
- Insect
- Oegoconia quadripuncta
- Gene Symbol
- -
- Assembly
- GCA_949316235.1
- Location
- OX438746.1:12228490-12231405[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.7 1.6e+02 3.9 3.6 1 23 182 205 182 205 0.82 2 15 0.075 7 8.2 3.0 3 23 212 232 211 232 0.97 3 15 9.5 8.8e+02 1.6 1.0 1 23 262 285 262 285 0.72 4 15 0.13 12 7.5 3.2 2 23 348 370 347 370 0.94 5 15 0.00026 0.024 16.0 0.9 1 23 376 399 376 399 0.96 6 15 0.0021 0.2 13.1 0.1 1 21 403 423 403 424 0.93 7 15 7.2e-05 0.0067 17.7 0.2 2 23 487 508 486 508 0.97 8 15 0.0012 0.11 13.9 0.7 1 23 514 536 514 536 0.98 9 15 0.022 2.1 9.9 1.9 3 23 560 580 558 580 0.95 10 15 9 8.4e+02 1.7 0.9 2 23 585 605 584 605 0.83 11 15 0.011 1 10.9 1.4 1 23 625 648 625 648 0.97 12 15 2.5 2.3e+02 3.5 0.5 1 23 654 679 654 679 0.89 13 15 1.1e-05 0.001 20.3 2.9 1 23 685 707 685 707 0.98 14 15 0.0024 0.22 12.9 1.1 1 23 713 735 713 735 0.98 15 15 0.053 4.9 8.7 2.4 2 23 741 763 740 763 0.96
Sequence Information
- Coding Sequence
- ATGGAGGTATGCATGGCTCTAGATACATCCTCAAACATAGCCTCTACCTCGTCGTCGGAGTGTGATGAGGCTCAACACATTCCAGCCAACAAGAACATTTGCATCCAATGTCTAGACAAAACTATACAgtcttacatttttattaaaaacaccaAAGAGACtgttaaagtaataaataactatgtgAATAGCTTTTACTCAAAAACACTGCAATTGAGTCACCGCATTGACCCAATATATGACTACAGTGATACAAAATTTGTTATAATCGTAGAAAATGACGAAAGAGATGATGATTTTGCGCCAGCAGGACCATATTATAGGGAAGTTGAAACATCAACACAAGACCAACCATATATACATACCAACAATATGACACATTATGTACAAGTCAAAAAGGAAGATATTGAAGttgaaaaagaagaaaatagaaaatatccAGCGGTGACTGAATCTCAGGGATCACAAACAAATGTAACAAAGAATAGCATTGCAAAGCTTAGTATTCAGCCAATACAACCTATTGAAACCCAAAATAATGCTTTCAAATGTGAAGAATGCGATTTATATATGAAAACGTTTAAACAATGGAAACAGCATGAACATACTTATCATAAGAAAGGTTCAGAacattgtaaaatttgtttcaAGAGTTTTGGCGACGATAATATACTAACTAGACATTACAAAACACATAACAGACTGAAATGTATAATCTGTCATTCTTTAGTGCAAGATACAGAATTCCAGATGCATTTGAAATTAGAGCATGATGATGAAACATATTCTTGTGAATATTGTGATTTCATTCATTATACAGAGTCTGTAGTAGATGCTCATACAAAAACCAGTCATTATGAGAGTACTCAAGAAGTTGTTGGTGACAATCAATGTACAATGTGcttaaattattacaatgacaaccaaataaaaaatcatCCATGTAGGTTCAAGTGTGTTGACTGCACCATTATGCCATGCATTCACTACAAATATCTAATTTCTTATAGGTATCAAAAACTAGAGTCTGTTAACAATATCAAATGTTTGGATTGTGATTATGAGTGTCACAAAAAGGAGAATTTCATTGCCCATGTGAATCAGAAACACCTAAACTATCATCCACATAAATGCAATATTTGTGATATGCAATACTATTCCAAAGTATTATTAGAAAGTCATATGATAATCACTCACGAGGAGAAATATGATTGTGTCTATTGTGTactaagttttaaaaataaagaatcatTACAAACTCATGAAATGGTATGCAGTTTACAAGGAAAAAATTTCATAGGTCATTCTCCAGATGCATCCTCCGATGTTCAAGAGACTTTATCCGATAATGCAGATCATCAGAAGGAAGACATGAACTGTAGGAGTGAGAGTAAATCTTCAGATAATAAAGGAAAATTTAATAGCGCTAACCGAACAGTTAGAAGACCACCAACTATGGAGTGTTCAatatgtgatattaaatttgCTTCGAAAGTCGAATATCTGCGACACATAAAAAGTCATGGGTCTAATGTTAAATATCCATGCAGAATTTGTAACATTGAATTTGACAGATTAAGGACGTTAACACTACACAATCGTAAACACAGGAAACCTAATAAAGCTGACCGTAAAGTATTGGAGGCCGAAGTGAATTCGGATAATAAAGGCCACCTATGCGACACTTGCGGAAAGTCATTCTTGACACAGATCCAATGGTACAATCACAGAAAGGTGCATTCATCACAGATACAATGTAAATTGTGTAACAAATTACTCAATCCTGCATCAAAATACTCCCACCAGAGATTCCATGAGTATCAACAAAACCCGTCGTTACGTAAACGTGCTAACCCAAATAGGGCTCGACCCCACAAATGTCCGCATTGTGAATATGCAGCTTTTACACGTGGTATGTTGGAAGCACACGTCAACAGATACCATTTGAAGGTGAAACCTTACGTCTGTGAAGTAGAGGGCTGTAATGTCGCCTACAGTTGTAGATATCAATTGAATGAGCACAAGGTCAATATGCATACTGCAGAGAAGTGGTTCACATGTACAGTTTGTAATAAAACACTACGCAACAAATCTGGTTTTAAAAAGCATATGATGCAGCATAACGGTGAAAGCCCGTACGTCTGTGAAAAGTGCGGTGATCGATTTAAAACTCTGAATCTGATGAAAGAACACCGGATGAGACATGAGGGGAAAACAATATCTTGCCCTCTATGCACACACATGTTCTATCAGTATAGAGATTTGAGATTCCACATCAGAAAGTACCATTGGAAGCATAAGGATAAACCTTTTGATCATACTAAATTAAAGGGATTATCGGAGAAagattattacataatatttcatGACCGCAGGAAAGTCATTAATGATGTGCCGGGGAACTGTAAAACTAATAATGGTCAATGa
- Protein Sequence
- MEVCMALDTSSNIASTSSSECDEAQHIPANKNICIQCLDKTIQSYIFIKNTKETVKVINNYVNSFYSKTLQLSHRIDPIYDYSDTKFVIIVENDERDDDFAPAGPYYREVETSTQDQPYIHTNNMTHYVQVKKEDIEVEKEENRKYPAVTESQGSQTNVTKNSIAKLSIQPIQPIETQNNAFKCEECDLYMKTFKQWKQHEHTYHKKGSEHCKICFKSFGDDNILTRHYKTHNRLKCIICHSLVQDTEFQMHLKLEHDDETYSCEYCDFIHYTESVVDAHTKTSHYESTQEVVGDNQCTMCLNYYNDNQIKNHPCRFKCVDCTIMPCIHYKYLISYRYQKLESVNNIKCLDCDYECHKKENFIAHVNQKHLNYHPHKCNICDMQYYSKVLLESHMIITHEEKYDCVYCVLSFKNKESLQTHEMVCSLQGKNFIGHSPDASSDVQETLSDNADHQKEDMNCRSESKSSDNKGKFNSANRTVRRPPTMECSICDIKFASKVEYLRHIKSHGSNVKYPCRICNIEFDRLRTLTLHNRKHRKPNKADRKVLEAEVNSDNKGHLCDTCGKSFLTQIQWYNHRKVHSSQIQCKLCNKLLNPASKYSHQRFHEYQQNPSLRKRANPNRARPHKCPHCEYAAFTRGMLEAHVNRYHLKVKPYVCEVEGCNVAYSCRYQLNEHKVNMHTAEKWFTCTVCNKTLRNKSGFKKHMMQHNGESPYVCEKCGDRFKTLNLMKEHRMRHEGKTISCPLCTHMFYQYRDLRFHIRKYHWKHKDKPFDHTKLKGLSEKDYYIIFHDRRKVINDVPGNCKTNNGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -