Oqua002610.1
Basic Information
- Insect
- Oegoconia quadripuncta
- Gene Symbol
- -
- Assembly
- GCA_949316235.1
- Location
- OX438741.1:49690047-49693230[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0046 0.43 12.0 0.4 3 23 154 175 152 175 0.94 2 12 0.12 12 7.5 0.1 1 23 181 203 181 203 0.94 3 12 0.0001 0.0094 17.3 0.6 3 21 234 252 233 253 0.94 4 12 1.7 1.6e+02 3.9 0.8 2 23 295 317 295 317 0.92 5 12 2.9 2.7e+02 3.2 0.3 2 11 352 361 351 371 0.82 6 12 0.00023 0.022 16.1 0.0 2 20 375 393 374 395 0.94 7 12 0.024 2.3 9.8 2.5 2 23 419 440 418 440 0.96 8 12 8.1e-05 0.0076 17.6 1.1 1 23 447 469 447 469 0.95 9 12 0.0097 0.9 11.0 2.0 3 23 477 497 475 497 0.97 10 12 2e-05 0.0018 19.5 4.0 1 23 503 525 503 525 0.98 11 12 0.00034 0.032 15.6 2.9 1 23 531 553 531 553 0.97 12 12 0.066 6.1 8.4 5.2 1 23 559 582 559 582 0.98
Sequence Information
- Coding Sequence
- ATGAGTGGTTCTAAATTGATATACTGCAGATTTTGTGCCGAACAGAAACCTATTTACCAAGTATTGGATTTAACACAAATTAACTCAGTCCGTAACGATATTATTGAAAAATTGACTTTTTTCGCCATTAACTGGTTAGATTTATCTGTGAAACATCTACCAGGAACAGTATGTAACTCGTGCTATCATTCCTTAACCACCGCACACGAATTTTTCACTAAAATCAAAACATCTCAAGATGTTCTCGCTAATCTTCTTACCGATAACTTGAAGCAAGATGACGACTCCTATCCCATCTATGGTGGCTCTAATAAGTGCGTTAAAGAAGAATTTATCTGTGAAGATTCAATGAATTACACTTTACAGATATCTAATGAAAATATGTTTGATGATAGCGTATTTGCGCAAACTAACTTGAGCGATACCAAAGACACATCCTGGAACTCATATCCTTGGTTTTGTAAGGATTGTAATACAACATTTGATAGTATAATTACGTTAAGGGAGCACACTAAGGAGGTTCATgagaaatgtaataattttcaatgtgcTGATTGTGATACTCCTTCAAACAATTTTAAAGAGTTTGCCGAGCATGCGATTCAGCATAGAGAAAATCTTGGtgaCTACTGCCAGTACTGTAACATGAAACTAGAACCTAACACAGACCACATATCGCACCACTCAACACAACCGCACTGCCAAACTTGCGGGGAAACGTTCCAAACTAAAACCTCTCtacaaaaacatataaacaaatacCAGTCATTAAAACAtatgaaaaagaaaaggaaAGAACAATCTAAGATTGCTACATTGCCAAAATCAGTTTCACATGAAGTAAAGGATATGAAGATAGAGTCTTGGAGCGATTACCCAGGGACATGTCTGTATTGTGGTGTGAAGGTTTCAGATGTGACGTCACTGAGATGTCACTTAAAAGAGGTTCATATGAAATGCTTTGGAATTAAATGCTGCGATTGTGACCAAAGATTGGATGATTTCACGATATTTTTCAACCATGTTTGGGAGCATAGGCCTAATTTAAAATTATATTGCCAGTACTGCAACCACAAGTTCAACGAAGATAATATCATCCATGTAGCTCAACACATAAACCAGCAATGCGACATCTGCGGTGAATCATTTGAAAGTTCCATCGACCTTGAGAAACATAAAGCCATTTACGGTCCGCCTAAACAAAAGAGAGTACCATTTAGAAGACGTGAGCGCCCGATAACGGAACACGATTTGACTTGTGGTATTTGCCAGAAGTTAACGAAGAGCCTTAGTTGCCTGAGGGCTCATAAGAAGCTTCATACAGATCGCTATAGAGACTTCTTTTGCGACAGATGCGGCAAGTCATTCTTTACTAAAGGCGCTCTGACTACCCACAATCTGATACACGACAATCCTGATCCGCAGATTTGTCGAATTTGCAAGAAATCCTTTCTGACTTTGACTCGATTGAAGAAACATGTTAATACGCATTACGATCGCAAACCTTTTGAGTGTGCGGAATGTCACAAATGTTTTAGACTGAAGGACCAATTAAAAGGTCACATGATCACCCACACGAACCTATTTCCGTATAGTTgtcaatattgtaataaaatgtttaaattcaaGACTGTGCTTAAAAATCATGAAGTGACCCATACGGGCGCCAGGCCTTATGTGTGTGGTGATTGTAATATGGACTTCAGTTGCTGGTCTAACTGCAATAAACATATGAAAAGGAAACATGGTACTACCCTCGCGAAAGGCAGATACACAGCAAATGGATATGGGAACGCGAAAATCGCTAAGTTTAAGAAAATGGATGGCGATATTAAGGAATGGACGGAGCAAATTATGGTGCCACGTAAAAGGGGTAAAAAGGTGAATACTGATGTTGGAAGCTGA
- Protein Sequence
- MSGSKLIYCRFCAEQKPIYQVLDLTQINSVRNDIIEKLTFFAINWLDLSVKHLPGTVCNSCYHSLTTAHEFFTKIKTSQDVLANLLTDNLKQDDDSYPIYGGSNKCVKEEFICEDSMNYTLQISNENMFDDSVFAQTNLSDTKDTSWNSYPWFCKDCNTTFDSIITLREHTKEVHEKCNNFQCADCDTPSNNFKEFAEHAIQHRENLGDYCQYCNMKLEPNTDHISHHSTQPHCQTCGETFQTKTSLQKHINKYQSLKHMKKKRKEQSKIATLPKSVSHEVKDMKIESWSDYPGTCLYCGVKVSDVTSLRCHLKEVHMKCFGIKCCDCDQRLDDFTIFFNHVWEHRPNLKLYCQYCNHKFNEDNIIHVAQHINQQCDICGESFESSIDLEKHKAIYGPPKQKRVPFRRRERPITEHDLTCGICQKLTKSLSCLRAHKKLHTDRYRDFFCDRCGKSFFTKGALTTHNLIHDNPDPQICRICKKSFLTLTRLKKHVNTHYDRKPFECAECHKCFRLKDQLKGHMITHTNLFPYSCQYCNKMFKFKTVLKNHEVTHTGARPYVCGDCNMDFSCWSNCNKHMKRKHGTTLAKGRYTANGYGNAKIAKFKKMDGDIKEWTEQIMVPRKRGKKVNTDVGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -