Oqua002607.1
Basic Information
- Insect
- Oegoconia quadripuncta
- Gene Symbol
- -
- Assembly
- GCA_949316235.1
- Location
- OX438741.1:49653356-49663083[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.049 4.5 8.8 0.2 2 23 147 169 146 169 0.87 2 11 2.5 2.4e+02 3.4 0.8 1 23 175 197 175 197 0.91 3 11 0.011 1 10.8 0.7 2 21 227 246 227 247 0.94 4 11 0.019 1.8 10.1 0.3 2 23 286 308 285 308 0.93 5 11 0.023 2.2 9.8 0.1 2 20 374 392 374 393 0.94 6 11 0.00073 0.068 14.6 1.1 2 23 421 442 420 442 0.97 7 11 1.1e-05 0.00099 20.3 0.6 1 23 448 470 448 470 0.97 8 11 4.6e-06 0.00043 21.5 0.7 2 23 477 498 476 498 0.97 9 11 4.3e-05 0.004 18.4 3.0 1 23 504 526 504 526 0.98 10 11 2e-05 0.0019 19.5 1.0 1 23 532 554 532 554 0.97 11 11 0.002 0.19 13.1 4.5 1 23 560 583 560 583 0.97
Sequence Information
- Coding Sequence
- ATGCGTGTCTCCGAAATGGTATACTGCAGATTTTGTGCCGAACAAACTTCTGTTATTTTTGACTATACAAAAATAACCTGTCTCCGTGAcgatattgttaaaatattatcatttttGGACCTAAAATGGTTTGACATATCCGCGAAGCACTTGCCTGAAACAGTATGTAAACGATGCTACCATTCCCTTACAAATGCGTACGAATTCATTACAAAAATCAAAACATCTCAGGCTGTTCTCACTAACCTTCTCACCAATTTGAAGCAAGAAAATGAGAGTGATCACTGTGAAAACCCCTTTATTATCAAAAGAGAAACAATTTATGAAGACTCgattcataataattttatgcCAGACAATGAAGGCACCAAACTTTGTTCAGAACTTCTACGAGTGTCTCTTGTTGAAGAGGATATGACATGGAACTCCTATCATTGGTCTTGCAAGGATTGTGGTATggtatttgaaaatatcaataaaataagaGAGCACAGTAAGGAAGTTCATGAGAAATGCAGTAATTTTCAATGTGCTGATTGCAGTGCTATTTTCAACTGTTTTGACTCCTTTGTCGATCATGCGAGAGGTCATAGACCAGGcttaaaCAACTACTGCCAATACTGCAACATAAAAGTAGAGCCCGAGACTGATCACGTATCTCTCCATAAAGCTCAGCCGCAATGCCATGCTTGTGGGGAGCTATTTAAACTCAAAACCTCGCTCCAAAAGCATATTTACACCTACCAATCGCAAAAGCGAAAAAAGAAATCCTTAAAGGTGCCCGCACTAGTTTCTGATGACGTGGGATTTGTTGATGAAGATATACATGTACAGTCATGGAGTGATTATCCGTGGATATGTCAGTACTGTGATTTAAAGGTTCAAGATCAGACTTCATTGCGGAGTCATTACAAAGATGTGCATATAAAATGTTCTGCAATGAGATGTTATGACTGCTATGAGGATGGATCTGAAACCTTTTttgattacaataaattttttggACATGTAAGAATGCATCGACCGAATTTGAAatCCCAGTGCCATTATTGTAATTACTTTGGCGACAACGCCATCCAAAGCATAGAAACATGTAGTGCTACCCATAACAACAGACCACAATGCGAAGTCTGTGGCGAGTTTTTCCAAGATATCACCGAATTACAAAATCACAAGGCCTTCTTTAATTTGCCTAAACCAACAAATATACCCAATGAAGCACACAAAACACGAAAAAAATCCGTAAATCCAGATGAATCAACCTGCACTATATGCAATAAGGAAATGAAGAATAGTAATTATCTTAAAATTCATATGAAATGGCATAATATAAAGAAAGAGTTCTTTTGTGAGAAATGTGGCAAGTCCTTTGCCTCACTGTATACCCTAGCTGCACATAATCAAACCCACACCGAAAGGGACCGACAGACATGCAAAATCTGCAACAAAACCTTTGTGAACTTGATTGGCCTTCGGAAACATATTAAAATACACGATGACAAGAAACCGTTTGAATGTGATCTTTGTCACAGATGCTTTAGGGCGAAAAGGAATCTCATTGAGCACATGATTGTACACACAGACTTATTTCCATACAATTGTCCGTATTGTGATAAAAAGTTCAAATTCAAGACTGTGCTTAATAACCATATAGTGATCCATACAGGCGCCAGGCCGTTTGTATGTACATACTGTAACAGAGACTTTACGAATATTGCAAATTGTAATAAGCATATGAAAAGGAAACACGGTACAACTTTAGCTAAAAGTAGAAACAAACCAAATGCTATCAAGAATGTTAATTCGATGAAAACTGATGAAGATGTTAAGAAATGGACTGAGGAAATAATGAGCAAGAGAAATAGGAAAGCTTTTAGAAGAGCCACTGTCGAAGGCAAGGTGGAGTTAAGGACACAGATAGTTGAACTTTATCAAAAAGGAGTCAATAAATGTGAAATATCACGTAAATTAAATGTATCGCGCAAGACAATCAACTTGTGGATCAATCGATACCGTGAGTGCGGCAATCTTAAGGACCTTTGCGATGTACCAACTACTGGCTCTGTAGGTACTGGTGAACACTAG
- Protein Sequence
- MRVSEMVYCRFCAEQTSVIFDYTKITCLRDDIVKILSFLDLKWFDISAKHLPETVCKRCYHSLTNAYEFITKIKTSQAVLTNLLTNLKQENESDHCENPFIIKRETIYEDSIHNNFMPDNEGTKLCSELLRVSLVEEDMTWNSYHWSCKDCGMVFENINKIREHSKEVHEKCSNFQCADCSAIFNCFDSFVDHARGHRPGLNNYCQYCNIKVEPETDHVSLHKAQPQCHACGELFKLKTSLQKHIYTYQSQKRKKKSLKVPALVSDDVGFVDEDIHVQSWSDYPWICQYCDLKVQDQTSLRSHYKDVHIKCSAMRCYDCYEDGSETFFDYNKFFGHVRMHRPNLKSQCHYCNYFGDNAIQSIETCSATHNNRPQCEVCGEFFQDITELQNHKAFFNLPKPTNIPNEAHKTRKKSVNPDESTCTICNKEMKNSNYLKIHMKWHNIKKEFFCEKCGKSFASLYTLAAHNQTHTERDRQTCKICNKTFVNLIGLRKHIKIHDDKKPFECDLCHRCFRAKRNLIEHMIVHTDLFPYNCPYCDKKFKFKTVLNNHIVIHTGARPFVCTYCNRDFTNIANCNKHMKRKHGTTLAKSRNKPNAIKNVNSMKTDEDVKKWTEEIMSKRNRKAFRRATVEGKVELRTQIVELYQKGVNKCEISRKLNVSRKTINLWINRYRECGNLKDLCDVPTTGSVGTGEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01090735;
- 90% Identity
- iTF_01090735;
- 80% Identity
- iTF_01090735;