Oqua017982.1
Basic Information
- Insect
- Oegoconia quadripuncta
- Gene Symbol
- -
- Assembly
- GCA_949316235.1
- Location
- OX438750.1:3724670-3732960[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00046 0.043 15.2 1.2 3 23 135 155 126 156 0.94 2 10 2 1.9e+02 3.7 0.1 3 23 179 200 177 200 0.91 3 10 0.0011 0.1 14.0 0.6 2 23 223 244 222 244 0.97 4 10 0.00041 0.038 15.4 0.3 1 23 248 270 248 270 0.98 5 10 0.00095 0.088 14.2 0.3 1 23 275 298 275 298 0.94 6 10 3.7 3.5e+02 2.9 0.6 2 20 305 323 304 327 0.83 7 10 3.2e-06 0.0003 22.0 1.0 1 23 334 357 334 357 0.97 8 10 0.026 2.4 9.7 3.1 1 23 363 385 363 385 0.93 9 10 1.1e-06 0.0001 23.4 3.6 1 23 391 413 391 413 0.99 10 10 9.2e-06 0.00085 20.5 3.6 1 23 419 442 419 442 0.98
Sequence Information
- Coding Sequence
- ATGATGGAGGAATCATGGGATGGTGACGCTAAAGTGGAAgtggaaataataaaggctgAACCCGACAGCGAACCGGGCTCCCCGTGTCGCGACGCGCTCGCAGACCATCACGACTATGACGAAGAATTGAAACCGGAAAACAATGAGGACTCCAACGACGATGTGCCCCTACAGCGGCTAGCGAGTGTCCGCCAAAGGAATCCCAGGCCTCCGCCCGAGCCCAACGGCCGGCCGCCGCCGCTGGTCAGACAGATGCTGGTTAAAAGGCCGAAATTACCAATGTCAAAAGTACAACAAATGATGCGCGAGCGAGACCCCACTTACATGACAGAGACGAATATACTAACCATTGTCGAGTATTCATACGTATGCCCTTTCAAATGCCGCCATAACCATCTCCTCTGCTACTACTGCGGGGAGAACTTCTCTGATCCAGTCTTACTAAGGGACCACACAGAGAACCATCACCATCCGAAGAGATTCAAAGTCACAGAACACAAGAACATGATAAAAATCGATATCAACAAAATCGATTGCAGACTTTGCGCAATGAAGATCGACGACCTTGAAGAGTTCAAACGTCATGTTTCAACAGTACACGGGAAGAAATACTACTTCGATTACAAAGACTCGGTGTTACCATTTAAGTTGactaaagaagagttaaagtgTGCGCTGTGTCAAGTGATATTTCCGTATTTTCACGCGTTGAACAAACATATGAATGTGCATTTCAGTAATTATGTGTGTGAAACGTGCGGGTTGGGGTTTGTGGATCGGGGGAGGTTCATGATGCATCAGCAGCGCCATGAGGAGGGCGACTTCCCTTGTCAGACTTGCGGGAAGGTGTTCAAAGCTCAGTATAATAGAGACCTTCACATAGACCGCGTCCACAAGAAGCGTGGACGCGTCTACTGCCCGAAGTGCGACGTGAAGCTGATGTCCTACCATCAGAAGCTAAAACATCTAGTGGATGTCCATGGGGAGGCGCCCCTCAGCTTCCCCTGTAACATGTGTGACAGGGTATTTGACACTCGGCGGACCCTGACGATACATAGGCGGAAGGAGCATTTGAAAGATTATAGGTACGAATGCCAGTGTTGTGGTCAGAAGTTCTTCACCCGCTTCGCTCTCAACAATCACATGCCAACACACACCGGGGAACGGAACTTCAAGTGTAAGGTCTGCGACAAGTGTTACCCTCGCCTCAAGACCCTGAAGGACCACATGAGGATACACACCAACGACAGGAGGTACCGATGCCATATATGCGGGCAGGCGTTTATACAGAACTGTAGTCTGAAAGGGCATATGAAGAGTCAACATCCGGAGTATGGCTAA
- Protein Sequence
- MMEESWDGDAKVEVEIIKAEPDSEPGSPCRDALADHHDYDEELKPENNEDSNDDVPLQRLASVRQRNPRPPPEPNGRPPPLVRQMLVKRPKLPMSKVQQMMRERDPTYMTETNILTIVEYSYVCPFKCRHNHLLCYYCGENFSDPVLLRDHTENHHHPKRFKVTEHKNMIKIDINKIDCRLCAMKIDDLEEFKRHVSTVHGKKYYFDYKDSVLPFKLTKEELKCALCQVIFPYFHALNKHMNVHFSNYVCETCGLGFVDRGRFMMHQQRHEEGDFPCQTCGKVFKAQYNRDLHIDRVHKKRGRVYCPKCDVKLMSYHQKLKHLVDVHGEAPLSFPCNMCDRVFDTRRTLTIHRRKEHLKDYRYECQCCGQKFFTRFALNNHMPTHTGERNFKCKVCDKCYPRLKTLKDHMRIHTNDRRYRCHICGQAFIQNCSLKGHMKSQHPEYG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00006539;
- 90% Identity
- -
- 80% Identity
- -