Oqua018009.1
Basic Information
- Insect
- Oegoconia quadripuncta
- Gene Symbol
- -
- Assembly
- GCA_949316235.1
- Location
- OX438750.1:3960346-3966780[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.054 5 8.7 1.4 1 23 32 55 32 55 0.97 2 18 0.05 4.7 8.8 0.4 2 23 83 105 82 105 0.94 3 18 0.019 1.8 10.1 0.6 2 23 128 149 127 149 0.97 4 18 0.042 3.9 9.0 0.1 1 23 153 175 153 175 0.96 5 18 0.037 3.5 9.2 1.8 1 22 180 201 180 203 0.78 6 18 0.85 80 4.9 5.3 1 23 210 233 210 233 0.93 7 18 7.9e-05 0.0074 17.6 0.6 2 23 240 262 240 262 0.96 8 18 0.00013 0.012 16.9 0.8 1 23 268 290 268 290 0.99 9 18 0.0002 0.018 16.4 0.1 1 22 296 317 296 317 0.96 10 18 0.069 6.5 8.3 1.6 1 23 380 403 380 403 0.96 11 18 6.8 6.3e+02 2.1 0.1 1 23 429 452 427 452 0.90 12 18 0.085 7.9 8.1 4.0 3 23 477 497 475 497 0.97 13 18 0.00017 0.016 16.6 1.7 1 23 501 524 501 524 0.94 14 18 0.0057 0.54 11.7 1.3 3 23 531 552 530 552 0.96 15 18 0.00019 0.018 16.4 6.6 2 23 590 611 590 612 0.96 16 18 0.0012 0.11 13.9 2.9 1 23 618 640 618 640 0.98 17 18 8.1e-05 0.0076 17.6 2.7 1 23 646 668 646 668 0.98 18 18 0.0065 0.61 11.6 4.5 1 23 674 697 674 697 0.97
Sequence Information
- Coding Sequence
- ATGAAAGTAAATAGGGAGAAGCACCATTCGAACATCAATGAGATCCTAAAATGGACGAACGCCACTGCAATTCGAGGGTACGAAGATGGCTGTTACACCTGCAGCTTCTGCAATAATCAATACCAAAAGCCAGCTGACCTTAAACTCCACACGCTCAAGACTCACAAGAATTCCGATATCAGTACAGCCAGTTTTATGAAGAGGAAAATGGATGGTTACTACGTCAAATTGGACATCACGAAGTTATGCTGCAGTATTTGCAAAGAGTCAATCGATACACTGGAGAACCTTATAGGACATCTTAAATACGAACACGACAGACCTCTGCACACCGATATAAATAACAGGATACTACCGTTTAAATTTGAAAGTGACTTGCTTACGTGTTTCATATGCACGAATGTTTTTTACCAATTCAGAACCTTGTTAGGGCATATGAATGTACATTACAGGAACTTTGTATGCAACGTTTGCGACGCGGGTTTCGTCACCCGGGCTATGGCAAGCATGCACAGCAAACGGCACGAAGTGGGCTCGCACAAATGTGACTACTGCGAAAAAGTCTTTACTACAGTAGACAGAAAAGGGACACACGAAAGATATGCGCACACGCGTAGAGATACTCTGTACAAATGCGCCCACTGCTCTgaatcatttatgtattttcacACAAAGCAAAAGCATTTGACGGAGGTGCACGGCGTCGATATTACTGCCAAATGCCAGGCTTGTAATAAAGTGTTTTCTGATCAGGCCAAATTGAGGGTGCACGTGAAGAGAGATCATTTGCTGGAGAGACGCTACAAATGTACGGAATGCGATATGAAGTTCTTCCAAGGAAAAGACTTGGCTAGCCACATGATAAAGCACACTGGTTCTAGAAATTATCAGTGTGGACTATGCGATAAGATGTTCGGATTAAAGAAGACCTTGCTGGTTCATATGCGTATCCAACCTGGTCGCACCATCAAAATCAGTATCAAAAAGACACCAAGTGCAGCTCAAGCGGGTACTAGAATATCCATTTCGAAAGCAAAGATAAAATCAAATCCAATTTTTGACAAACATATTCACAATTTGAAAGAGCTATTGGAGTGTACGAATGCGACACCGTTTCGTTTACATAGTGCTCTTGGATTCTCATGCTTCTACTGCTCTGATTATTATCAAGATCCCGATACTCTAAAAAAACACACGAGAAATGTACATAACACCACAAACTTAAAACATGTGAAAACATCAGCAAACGCCGAAAGATATTATGTTAAGTTAGATATCACCTGTTTTACGTGCATCATTTGTGACATAGCTGTTGATACGATAGAACAAATGATTCTTCATTTAATCaaagaacataaaaaaatcatacacaCCGATATCAAGAATCAAATTTTACCCTTCAAGTTCTACGACGCGACCACAATGGCATGTTTCATGTGTTCGAATAAGTTTAATACGTTCAAGAGTTTGCATGAACACATGAACAAACACTACGGAAATTTCCTATGTCCTGAATGCGGAGCAGGATATGTCAATTGCCATAATTTGAAGAAACATGTCAGAGAAACCCATAGAAAAGGCACGGTCTTTTGTGATCACTGTCCCAAAGCGTTTGATACCTATATTAAAATGAAGGCCCACGAGAAAAAAGTTCATGTCCATGCACATTATGTACTCAAATGTGTGTGCTGCAACGAGAAATTTCGGTCTGTTGTAGACAAGAACATTCACTTGGctaaaaaacataatattcatAAACCGGGCCCTAAATGTGAAACGTGTAATAGGACTTTTGACCATCAATTTCAACTAACAATGCATATAAGGAGGCACCACTTGATGGATAAAACACACGAATGCGAGCACTGTGAGAAAAAGTTTTTCGCAGGTAAAGATCTGAGAGCTCACATGCTGACACACACTAAGGAACGTAACTTTGAATGTGACATATGTCACAAACGTTACGGGAAGAAGTATACTTTACGGGAGCATCTGAGAGGACATTTCGATGATCGCAGATTCAAGTGTGAGCATTGCGGCAAGGCTTTCTTGCAGAAGTGCAGTTGGAAGGGGCACATGTTGAGCAAACATGAGGAGATAGTGTAG
- Protein Sequence
- MKVNREKHHSNINEILKWTNATAIRGYEDGCYTCSFCNNQYQKPADLKLHTLKTHKNSDISTASFMKRKMDGYYVKLDITKLCCSICKESIDTLENLIGHLKYEHDRPLHTDINNRILPFKFESDLLTCFICTNVFYQFRTLLGHMNVHYRNFVCNVCDAGFVTRAMASMHSKRHEVGSHKCDYCEKVFTTVDRKGTHERYAHTRRDTLYKCAHCSESFMYFHTKQKHLTEVHGVDITAKCQACNKVFSDQAKLRVHVKRDHLLERRYKCTECDMKFFQGKDLASHMIKHTGSRNYQCGLCDKMFGLKKTLLVHMRIQPGRTIKISIKKTPSAAQAGTRISISKAKIKSNPIFDKHIHNLKELLECTNATPFRLHSALGFSCFYCSDYYQDPDTLKKHTRNVHNTTNLKHVKTSANAERYYVKLDITCFTCIICDIAVDTIEQMILHLIKEHKKIIHTDIKNQILPFKFYDATTMACFMCSNKFNTFKSLHEHMNKHYGNFLCPECGAGYVNCHNLKKHVRETHRKGTVFCDHCPKAFDTYIKMKAHEKKVHVHAHYVLKCVCCNEKFRSVVDKNIHLAKKHNIHKPGPKCETCNRTFDHQFQLTMHIRRHHLMDKTHECEHCEKKFFAGKDLRAHMLTHTKERNFECDICHKRYGKKYTLREHLRGHFDDRRFKCEHCGKAFLQKCSWKGHMLSKHEEIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -