Oqua011143.1
Basic Information
- Insect
- Oegoconia quadripuncta
- Gene Symbol
- -
- Assembly
- GCA_949316235.1
- Location
- OX438746.1:10817760-10822905[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0016 0.15 13.5 4.8 1 23 151 174 151 174 0.97 2 17 4.4e-05 0.0041 18.4 1.0 1 23 183 206 183 206 0.96 3 17 0.015 1.4 10.5 0.4 2 23 219 241 219 241 0.97 4 17 0.00057 0.053 14.9 0.3 1 23 250 273 250 273 0.98 5 17 0.00016 0.015 16.6 1.4 1 23 285 308 285 308 0.96 6 17 0.0002 0.018 16.3 0.6 2 23 336 358 335 358 0.96 7 17 0.0014 0.13 13.6 1.2 2 23 368 390 367 390 0.96 8 17 0.067 6.3 8.4 1.6 3 19 396 412 394 415 0.92 9 17 0.00064 0.059 14.7 0.5 2 21 420 439 419 442 0.94 10 17 0.036 3.3 9.2 1.8 3 23 452 473 451 473 0.96 11 17 0.0011 0.1 14.0 3.0 1 23 478 501 478 501 0.92 12 17 0.0011 0.1 14.0 1.0 2 23 513 535 513 535 0.96 13 17 0.026 2.5 9.7 5.0 1 23 562 585 562 586 0.93 14 17 0.21 19 6.8 0.1 2 23 592 613 592 613 0.95 15 17 0.031 2.9 9.4 1.0 2 23 620 641 619 641 0.97 16 17 0.11 9.9 7.8 0.1 1 23 707 729 707 729 0.96 17 17 0.2 19 6.9 2.0 1 23 735 758 735 758 0.96
Sequence Information
- Coding Sequence
- ATGTCTGTGAAAGAAGaattattagatttaaaaatcaaGGTCGAATCTGAAGAAAGTAAACGCCGTGATCCAACATCATTTTTGCCCGAAGAACCAATGTCCTATGAaattaagaagaaaaaaaagaaaaagaagaaaaagcaGGAAGACCCATTTAAAGATATAGAAGAGAAGGTTGTTATTACTGAGAGAATCATCATGGCTGAAATTGAACCGTCACTGGACCCCGAGGTTAATATAAAAGTGGAAAATATAGAAGTAGAGTTGGATTATAATGACtttGCCAGCAGCACCGGCCTAATGCTTGAAGGGCCACATAGCGAAGACAGTCAGGAGCAAGAAATCAGAATAGACCCGAGAAGTCACGAAGCCGCAATTTTAACATTTGAGAGCATAATCAACGACAAGTCAGTGCTCGGGTATGGTCAAGGAATCGACACGAAACCCACCCATGTCTGCAAAGTTTGTCATCTAGTATTCCAATCGCCGAAAACTCTACGCATGCATCAGAAACGTAAACACAAATCATTCAGACGTTCCTTCAAACATATTTGTGATTACTGTGGCATGTCGTACGAACAGAAAAACAGTCTAGTAGCCCATATAAAACGAAAGCATGGACCAAACGCATCCCAAAATGATACAGAGGAAAGAACTTGTGACATTTGTGCATTAGTTTTTAAAGGAATGGCTAGATTGCGAATGCATATGCGTAGGAAACATGGATCGTTTCAAGATGCTTTTAAATACGTCTGTCAGGAATGCGGTTTGACTTACGACAAAGGTAGAAGTTTAATTGTCCATATGCAGCGTAAACATTCGAGCGATCAAAAACCTGTAGCCGAACAATGGTTCAACTGCCCTTTTTGtccaaaaatatttactaaaagGGAGACCTATGCTAGACATGTCCAAAGAAAACATCAGGTCGACGAAGATGGTATTGGTGTAGGCCAAAGCGCCGATGTATTTTGGGAAAGCTTCAGAAACGAAGCCGGTGAAATATCTTGTAAAGAGTGTCCTCTAGTCTTTTCgtcaattaactttttaaaattgcaCATGAGAAGGAAGCATAACGCTTTAAAGGAAGATTTTAGATTAAAATGTAGAATATGTAATTTGTCATATGATAAAATAGAGAGTTTGAAGCGACATGTAAGAAGAAAACATGATAAGCGGTCGCATTGTAATGTTTGCAATAAACAATTTGACACAAGAGAGCTATATTTGAATCATTCTCATGTGAAATTAATTAAGGAATGTTCGATTTGTGGGCTCATTTTCGCAACTCAAGGCGGTTTAGCAAAACATTTGCGGTGTACACACAAAATTGAATCACAGAAAACAGTATTTTGCAACATATGCAATATGGGTTTTCATGATAAACGTCAGCTGAAGCCGCATTTGATGAAGGTGCATTTAAAAGTGTCCTACACATGTAGATATTGTAAAAAAGTGTTTAAAGCCAGAGAGAGTTACAGACGACATGTGATATTCAAACATCCTGTTAAAAATTACCCAATAACAGATGTAGAGAAATGTGAACGGTGCAGTGAAACATTTCCTGATGAGTTTGAGTTGTGCAGACACATCAATTTAGCGCATGGCGAGCAGCCGATGTTAACGCAAGGAAGTTTATTAGAGGTTAAAAAAGAAGAACTTGATGAAACCGAAGAAGACCCATTCCATTGTACAAAGTGTAGTGAAACTTACTTCACTTGGGAACAATTACGGTTGCATTATGAACAGAATCATCATACAGTAAGTGAAGCTCAGTGTCAAATTTGTGGTCAAATAGTACCTGAGAACGAACTACAGAAGCACATTAAGaatttacacacaataaatgCTGACGTACAATGTAGGTATTGCGATTTCAAGTCAAATGTTCGGGCTAGCATGACACAACATATGTTGAGACATAAGAATGCTACAACACTGCACTGTGAATACGCCGGTTGTCGATATAAAACATATTATGAAGGTGCCATGGATAAGCATAAGAGGCGACATCAAGATCAAGGTGTAAAGTTACAGTGCACACAATGTCCGTTCCAAACtatgaataaatacatattgaaATATCACGAAGAGGCACATAGTACTGGGAAAAAGAAGTATGCGTGCGATCAGTGCGATTATGCGACCGTATTACCAGCTACATTAGTACAACATAAGTACAAGCATTCAACAGAGAAAAGGTTTAAATGCGAAGTGTGTCCGTTTGCCACAAAGTATAACACATCGTTACGTTTTCATGTTAAGAAaaaacactgtgatctacccaCTTTGTTAAGTTAA
- Protein Sequence
- MSVKEELLDLKIKVESEESKRRDPTSFLPEEPMSYEIKKKKKKKKKKQEDPFKDIEEKVVITERIIMAEIEPSLDPEVNIKVENIEVELDYNDFASSTGLMLEGPHSEDSQEQEIRIDPRSHEAAILTFESIINDKSVLGYGQGIDTKPTHVCKVCHLVFQSPKTLRMHQKRKHKSFRRSFKHICDYCGMSYEQKNSLVAHIKRKHGPNASQNDTEERTCDICALVFKGMARLRMHMRRKHGSFQDAFKYVCQECGLTYDKGRSLIVHMQRKHSSDQKPVAEQWFNCPFCPKIFTKRETYARHVQRKHQVDEDGIGVGQSADVFWESFRNEAGEISCKECPLVFSSINFLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHVRRKHDKRSHCNVCNKQFDTRELYLNHSHVKLIKECSICGLIFATQGGLAKHLRCTHKIESQKTVFCNICNMGFHDKRQLKPHLMKVHLKVSYTCRYCKKVFKARESYRRHVIFKHPVKNYPITDVEKCERCSETFPDEFELCRHINLAHGEQPMLTQGSLLEVKKEELDETEEDPFHCTKCSETYFTWEQLRLHYEQNHHTVSEAQCQICGQIVPENELQKHIKNLHTINADVQCRYCDFKSNVRASMTQHMLRHKNATTLHCEYAGCRYKTYYEGAMDKHKRRHQDQGVKLQCTQCPFQTMNKYILKYHEEAHSTGKKKYACDQCDYATVLPATLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTLLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -