Oqua002246.1
Basic Information
- Insect
- Oegoconia quadripuncta
- Gene Symbol
- -
- Assembly
- GCA_949316235.1
- Location
- OX438741.1:42165446-42210094[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.6 1.5e+02 4.1 0.0 2 23 509 530 508 530 0.93 2 19 0.0054 0.5 11.8 0.0 1 23 540 563 540 563 0.95 3 19 2.9 2.7e+02 3.2 1.4 1 21 686 706 686 707 0.92 4 19 0.068 6.4 8.4 3.2 2 23 767 788 766 788 0.95 5 19 3.7 3.4e+02 2.9 0.7 1 23 801 825 801 825 0.91 6 19 8e-05 0.0075 17.6 0.5 2 23 831 854 830 854 0.96 7 19 0.052 4.8 8.7 0.3 1 23 860 882 860 882 0.92 8 19 0.0025 0.23 12.9 3.3 1 23 888 910 888 910 0.98 9 19 0.04 3.7 9.1 0.0 2 21 921 940 920 941 0.92 10 19 6.5e-05 0.0061 17.9 0.5 1 23 1020 1042 1020 1042 0.98 11 19 2.3 2.2e+02 3.5 7.2 1 23 1049 1071 1049 1071 0.95 12 19 0.0055 0.51 11.8 2.2 1 23 1114 1137 1114 1137 0.95 13 19 0.0084 0.79 11.2 1.1 1 23 1144 1167 1144 1167 0.97 14 19 0.0044 0.41 12.1 0.2 2 23 1186 1208 1185 1208 0.96 15 19 0.054 5 8.7 0.1 3 23 1227 1247 1226 1247 0.97 16 19 0.011 1 10.9 1.1 3 23 1254 1275 1252 1275 0.94 17 19 0.00032 0.029 15.7 1.6 1 23 1281 1303 1281 1303 0.97 18 19 0.00028 0.026 15.9 0.4 1 23 1309 1331 1309 1331 0.96 19 19 0.21 19 6.8 0.0 1 13 1337 1349 1337 1352 0.90
Sequence Information
- Coding Sequence
- ATGGCCGAGCCCCATCCTCCGTTGATCCTCTTCATGGACAACGCGGCTGGCGAGGAGGTCGCTTTGAGAATCGAAGCCGACGACGACTTCCAGACCTTCCTAGATAAAGCCAAGTCATTACTAGGCTTCGACGTTGATATCAATTCAATAACTAAAAACCAACCGGTCTCTCCAAGCGACAACGTCTACCAATTCCTCATAAACCTTGACCAAAATCTCGCCACAGAAGCAGAGCTCACCGCTCAAAATTTCCAGCAAATTTTAGAACCAACAGGAGATGAAGACGACTTGGTATATATTTTAGATGATGGCACTCAAATACGAGCCTCTCAAATCCATTTCGATAATGAAGACCCATTAGTTGACTTAACAGTAGAAAAAATACCGTTTGTCAAGTATGCAAACAATGTAACAGACGATATAGATTCAGATAAAGTTGAAGTCCAAGATACGAAACTTTATAATATAGTTGAAAGTCCTATTTCTAGGTGGTCTAGTAAAAATACGAGTCCACAATGCAATTTCGTTAACACACTACCTTTCAAATTGATTTGTAACAATACTTCAGGATTTGAGGCACAATTCACTAAATATTTAGAAGCAAGCGCAAACAAAAGTTACGCTACTTTAAGCAATGTGGTTAATAGGATTAAGTCTCCAAGGAGTTTGATAAGAgagaattataaaaactatgaAGACAACTTTCCTGCTCATAGAAATACTGACGATTTTGCTCATTACACTAGAGAAGAGATACTGAACATGTTTAAAGATTCTCCAGTGACCTCTCTACCTTATGAGAATCAAGGTTTTACAGAGAAACGCCGACATGTCAGAAAATCCGATCCATCTAGATCATACAAAAGTTGGAATACGAAACCTATATCAAACATTGATATGGACGGTGTTCTGATTGCTGAATCAGAAAACCAGAATTGTTTTATTTGCAATAGGTTTGTTGACAGCAATATTGAGAAGCTGTATTTGTTTGACAATGAAGACCAGAGGCTCCATAGATCCTCTCCACAGAAGAAATTGTCCACACAATTGAAGATTATCTGTGAGCAGTGTTTGGATGAGAATTTCAAGCCATCCCGCTTGAAGAGTCCAAATCAATCCCTGAATCCGGACGAGTATTTAGTAATACGAAACAATCAGCAATATATATTCCAGAAGGCGAATTCTTTGAATTTCAAAAAACACTTCTCCAATTTTCGCGACGCGAAAGCAATCATAGATAAGATCGAGTCTGAGTTCTTGAAAGACAAGAAGAAGACTGAGTTCGTTAAAGTCGAGATAGGTTCTGATGGGGAGATTGTAACGAAGCCCATTGATAATGACGCTGGGTCAGATGACATCATCATAGTTAAAGATGAAAGGAAGGAGAGTTCCAGTGACGTTGAGATCATAGAGAACGGCCCGGAGATAGATGATAACATCATAGACAATCTAGATGATGCAGATGAGGAAGTTAAAGAATTCTTGGGGAAGTACCAGTGTGATGATGTGGAGTTGAAGGAATTGAAATGCCGGTTTTGCGAGCGTATATTCGCCGATATGCCCGAAGTGATCGAACACGGCGAAACACATAAACACGTGTTGGAGGACGGTGAAGTGTTCCCTTGTCCACTTTGCGATTATGGTTACGCTAACTACAAATGGCTGAAAGGTCATCTAAAGGCAGCACATGATCGGAAAACAGAACCCGTCAAGTGCGAGGATAATGATCCGCTCAAAGAAGACATCACTAAAGTTGCAGAATCCCCGTCGCCCCAGGCCTCGCCAATCGCTAAGAGAACTCGAAGTGCTGCAAAGAAAGTCCATAACGCGAGTCCAAAAGGCTCTCCGGAACGTACCACGGTTTCAACGGATTTGACTACTAATTCAGAATCGGTCAAAaaTGACTTCGAAATAAAGACTGAGGTGAAGCATGAGACCATGGAGAGCAGCGATGATGAGATATGGATCGTGCAGACGgctgacgatgaggccgaacaACAGCTGAAGAAGATATTTGACGCAGCTAAGAAGGAAGAGGCTGATGGAGTAAACAAACATTCTTGCAGGAATTGTGGTCAGCTGTACGTATCTACGGAGGGGCTGGCAAACCACAAGTGCCGCCGGCGGGCGCCAAAAGGCAAATCTATCAAGGATGGGGCCATACGGACACCATCATACGATGACTTCGTTAAGagagCTCGAGGAAGACCAAGGCTTCACGGCTCGGGTGATGAGTTGTTGACTGTgCGGCCCCGCAAGAAGAAGACGAAGGAGACAACCTCCAACCCGCAGATAGTGACGTGCCACAACTGTGAGGAGTCCTTCACGTCTAAAGTTAGACTGAAGTTTCACATGCAATTCCATGACACAAACAACAGCATGCTGACTCCTGACGGCCAGTACTACTGCGTGGAGTGTCCAAGCGCGACGTTCCCGACGGAGACGGAGCTGTTCGACCACCTCCACTTCCAGCACAAGCAGAAGCGATGGCAGTGTCCAGTTAAGGATTGCGGCAAGACCTTCTACCTCAGGGCGACACTGACCAAACATAGTCGCATGCATACGGACACACGTCGGTACGCCTGTAGCACTTGCGGAAAGAGATTCCTGGACAAGCAGACCCTGGATGAGCATGGGGTTACACATCTACAGATAAAGCCGTTCCAATGCCACATCTGCTTGAAGCAGTTGACGCGGCGCTCCCGCCTCAGGATGCACCTTCGGGCTCACGAGGAGGAGCTCTGTCCCCGCCTGGTGTTGGTCTGCGCGGTCTGCTCGCGAGCCTTCCGCGACGCAGACGATGTCCAGGAGCACTTGATAAGGTCGCCGGAGTGCATCGCAGAGTTCACGAACGAACTGAAGGAGGAGAACGACGCTGTCGCCGTTCAACTGTCCCCCACTAGTGGGCTAGTCAGCCACACAGTTAAAGTTGTCGAGTCGCCAAAGCTGTGCATGCCGGTCCGGCGGCAGGCGAGCGGGCCGCCGGCCGAGGCGCTGCTGGCGCGGGTCAGCGGCGAGGCCAGGGCACTCGTCAGGGTCGTGGAGATCGACCGCGCCTTCCGCTGCGAGTACTGCGAGGAGGTATTTTATTCAGAGAGTGGTCTGAACAACCATCGAATTAGACACAAGGGTGTAAAGAACCCTTTCACATGCCACATCTGCAAAGTTAGCTTCGCTACGTATTCCAGATGTACAACACATAAGACGACCCATGGTTTTTATAAGCGTTCGTTGGCTCACGTTAAGAAGCAAGGTGAAGAGTCCCCCACTACTAAACAAGAGGGGGGTCCATCATCGACCGGCATCCTTGGTTATGGCGACTTCCCTGTcgtgaaacattttttatgtgAGAACTGCGGCCGGTCGTACTTGCATTGGACGTACCTTCAAGTGCACAGGCGTATGAAGCATGCCGTCGGCAACTATAAGTATCAATGCAGTCAATGCGATCTCAAGTTCCCAAACAGTTGGAGCGTGTCATATCATAAGAAGAAAATTCACAGCAAAGAAGATAGCGGCAGTACGAGCAAACCTCCTAAAGATGACTACagGATACCATGCCGCGACTGCGACGAGGTGCTGCCAAACAAAACTGCGCTCTATAAGCATAGGAAAAAGGAGCACAGTGACGTATCACTACGTGTCAACAACAAACCAGGCGCGTCGGGCGTGTTCTGGTGCGGCACGTGCGACAAGCAGTACGGCAGCCGCGCCGGCCTCGAGGCGCACTCGCGCGGCCACGCGGCGCGCGTCACCGCCTGCGCCAAGTGCGGCCACAGCTTCCCGCACGTGGCCGCGCTGCATGCCCATCTCAAGGAGGCCCACGGCCACGAGTTGGACCACCCGTGCGAGGCGTGCCCGAAGCGCTTCTGCTCGCGCGCCGAGCTGGCCGTGCACCGGCGCTCGCACTCGGCGCTGCGGCCGCACGCCTGCCCGCAGTGCGGCCGCGCCTTCCGCACCGCCTCCGTCCGCAACGAGCATCTGCGCATCCACACCGGCGAGCGCCCCTTCCCCTGCGACGTGTGCGGCATCGCCTTCCGCAGGTCGGTGCTCACAGCCAGCGCGACCGCTAACACAGATGGCGAGCTAAGTGTGTCCCTACCTGCAGGTCGGTGCTCACAGCCAGCGCGACCGCTAACACAGATGGCGAGCTAA
- Protein Sequence
- MAEPHPPLILFMDNAAGEEVALRIEADDDFQTFLDKAKSLLGFDVDINSITKNQPVSPSDNVYQFLINLDQNLATEAELTAQNFQQILEPTGDEDDLVYILDDGTQIRASQIHFDNEDPLVDLTVEKIPFVKYANNVTDDIDSDKVEVQDTKLYNIVESPISRWSSKNTSPQCNFVNTLPFKLICNNTSGFEAQFTKYLEASANKSYATLSNVVNRIKSPRSLIRENYKNYEDNFPAHRNTDDFAHYTREEILNMFKDSPVTSLPYENQGFTEKRRHVRKSDPSRSYKSWNTKPISNIDMDGVLIAESENQNCFICNRFVDSNIEKLYLFDNEDQRLHRSSPQKKLSTQLKIICEQCLDENFKPSRLKSPNQSLNPDEYLVIRNNQQYIFQKANSLNFKKHFSNFRDAKAIIDKIESEFLKDKKKTEFVKVEIGSDGEIVTKPIDNDAGSDDIIIVKDERKESSSDVEIIENGPEIDDNIIDNLDDADEEVKEFLGKYQCDDVELKELKCRFCERIFADMPEVIEHGETHKHVLEDGEVFPCPLCDYGYANYKWLKGHLKAAHDRKTEPVKCEDNDPLKEDITKVAESPSPQASPIAKRTRSAAKKVHNASPKGSPERTTVSTDLTTNSESVKNDFEIKTEVKHETMESSDDEIWIVQTADDEAEQQLKKIFDAAKKEEADGVNKHSCRNCGQLYVSTEGLANHKCRRRAPKGKSIKDGAIRTPSYDDFVKRARGRPRLHGSGDELLTVRPRKKKTKETTSNPQIVTCHNCEESFTSKVRLKFHMQFHDTNNSMLTPDGQYYCVECPSATFPTETELFDHLHFQHKQKRWQCPVKDCGKTFYLRATLTKHSRMHTDTRRYACSTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEELCPRLVLVCAVCSRAFRDADDVQEHLIRSPECIAEFTNELKEENDAVAVQLSPTSGLVSHTVKVVESPKLCMPVRRQASGPPAEALLARVSGEARALVRVVEIDRAFRCEYCEEVFYSESGLNNHRIRHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLAHVKKQGEESPTTKQEGGPSSTGILGYGDFPVVKHFLCENCGRSYLHWTYLQVHRRMKHAVGNYKYQCSQCDLKFPNSWSVSYHKKKIHSKEDSGSTSKPPKDDYRIPCRDCDEVLPNKTALYKHRKKEHSDVSLRVNNKPGASGVFWCGTCDKQYGSRAGLEAHSRGHAARVTACAKCGHSFPHVAALHAHLKEAHGHELDHPCEACPKRFCSRAELAVHRRSHSALRPHACPQCGRAFRTASVRNEHLRIHTGERPFPCDVCGIAFRRSVLTASATANTDGELSVSLPAGRCSQPARPLTQMAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -