Oqua017729.1
Basic Information
- Insect
- Oegoconia quadripuncta
- Gene Symbol
- -
- Assembly
- GCA_949316235.1
- Location
- OX438749.1:32952290-32965575[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.6e-05 0.0043 18.3 4.1 2 23 147 169 146 169 0.97 2 10 0.015 1.4 10.5 1.4 2 23 175 197 174 197 0.96 3 10 1.5e-07 1.4e-05 26.2 2.9 1 23 203 225 203 225 0.99 4 10 0.00014 0.013 16.8 2.7 1 20 231 250 231 252 0.95 5 10 2.3e-05 0.0022 19.3 0.6 2 23 264 285 263 285 0.96 6 10 8.6e-06 0.0008 20.6 1.2 1 23 291 313 291 313 0.97 7 10 3e-05 0.0028 18.9 1.8 1 23 319 341 319 341 0.96 8 10 5.4e-07 5e-05 24.4 6.5 1 23 347 369 347 369 0.99 9 10 0.00011 0.01 17.1 1.8 2 23 376 397 375 397 0.97 10 10 0.00085 0.079 14.3 7.6 1 23 404 427 404 427 0.98
Sequence Information
- Coding Sequence
- ATGTCGTTTACCGAGCCTAGTGTGATTGTGAAAATAGAGCCCATTACGGAAGAATACGAACATGCCACTGGGGCCTGTGGCTTACAAGCGGAAGCCGATGCTGTACCGCAGCCGGAGTTCGTCAGCATCAAGATAGAGCCAGAAGACCTAACAGACTCCAGCGATGGTGTAAGCGCGTTGGTCCACGCCACGGCGTCCACCAATGGGTGCTCGAGGCTTCAGCCGGCGGTGCCGCTCTATGTGACTGTGAAACAAGAGCACTTGGAGCCCGAGGTGATCTCCACGGAAGGAAAGGAGTTTACACGTATGGAAGATGACAACCTGATAACCCTTATGAACCGTAATTCGGAGTACTCCGAACGCTGGATTACCGACGggattaaaaaaagctcttCGAACCTGATTTCAGACTTCATAGCAAGCTTGATCAAGTCAGACAAGTGCAAGTGCTTTTGCGGCAAGCAATTATCCAGCAAGAGCAATTTACAGCGACACCTCCTGACCCACCAGCATATCAAGCAACAGTGCCACATGTGCCCGAGGCAGTTCCTCAACCGGCTACTGTTGGAGAAGCACATCCAGAACGTCCATGGTGATGATAAGGTGTACGAGTGTGATGACTGCGGGAAGCATTACAGATCTTCATCAAACCTGTTCCAGCACAGACGCGTCCACTTAACAGTGAAACCTTTCAGCTGCGAGATTTGCCACAAAACGTTCGCAGTGAAGTGCAACCTACTGAAGCACCAGGGCAAGAGTCGCTGCAAGACACCGAGGACGCAGCCGCTGATATGTACCATCTGTAATAAACTATTCAAACGAGAATACCTACTGAAGAGTCATCTAAATGTGCACAACGATGAGAAACCTTTCGAATGCGCTGATTGTggtatgaaatttaaatataaaagcaCTTTAATTCGACACTTTCAGCTGCATAACAACGATCGACCTCATGCTTGTAAAGAATGTGGGAAAACGTTTACGCATCCCGGCTTGATCAAACCGCATATGAGAATGCATACCGGTGAAAGGCCGTACACATGTCCGATATGCCAGAAACGTTTCTCTCACAAACATAACATGCAAAGGCACATGCTGAGGCACAACAAGATAAAGCACCTCGTCTGCGAGGTGTGTCACAGACAGTTCCCCAAAGAGAGCCGTCTGAAATATCACATGCGAATGCATATGGAAGATAAGAAGCCTTTCAAATGTGAATTCTGTAAGAAATCGTATTCGCATAGGCAGAATATACAAAGGCATTATAAGAAGAAACATCCAACGCAGAGCTATAACCGTCCGGAGACAGATGCTAGTGTGGCTTCGGTGTTTTGGGAGGCCGTGCTGAAGAAGAAGATGGAAGCGGAGAAGGACTTCATAATACCCGAACTGACGTATCCTGATGAAGTTGTTAAAATTAAGGAAGAGAAAGAAGAGTAG
- Protein Sequence
- MSFTEPSVIVKIEPITEEYEHATGACGLQAEADAVPQPEFVSIKIEPEDLTDSSDGVSALVHATASTNGCSRLQPAVPLYVTVKQEHLEPEVISTEGKEFTRMEDDNLITLMNRNSEYSERWITDGIKKSSSNLISDFIASLIKSDKCKCFCGKQLSSKSNLQRHLLTHQHIKQQCHMCPRQFLNRLLLEKHIQNVHGDDKVYECDDCGKHYRSSSNLFQHRRVHLTVKPFSCEICHKTFAVKCNLLKHQGKSRCKTPRTQPLICTICNKLFKREYLLKSHLNVHNDEKPFECADCGMKFKYKSTLIRHFQLHNNDRPHACKECGKTFTHPGLIKPHMRMHTGERPYTCPICQKRFSHKHNMQRHMLRHNKIKHLVCEVCHRQFPKESRLKYHMRMHMEDKKPFKCEFCKKSYSHRQNIQRHYKKKHPTQSYNRPETDASVASVFWEAVLKKKMEAEKDFIIPELTYPDEVVKIKEEKEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -