Oqua013977.1
Basic Information
- Insect
- Oegoconia quadripuncta
- Gene Symbol
- -
- Assembly
- GCA_949316235.1
- Location
- OX438747.1:27027819-27029783[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.7e-05 0.0044 18.3 1.8 2 23 70 92 69 92 0.93 2 15 0.12 11 7.6 7.0 2 23 100 122 99 122 0.95 3 15 0.022 2.1 9.9 0.9 2 23 129 151 128 151 0.92 4 15 2.4e-07 2.3e-05 25.5 1.5 3 23 160 181 158 181 0.96 5 15 0.00052 0.048 15.0 1.4 3 23 190 211 189 211 0.96 6 15 0.00099 0.093 14.1 1.2 1 23 218 241 218 241 0.97 7 15 5.4e-06 0.0005 21.3 1.4 2 23 247 269 246 269 0.93 8 15 0.00016 0.015 16.6 2.2 2 23 285 307 284 307 0.94 9 15 0.0058 0.54 11.7 3.3 2 23 315 337 314 337 0.96 10 15 8.4e-07 7.8e-05 23.8 1.8 3 23 344 365 343 365 0.97 11 15 0.0012 0.11 13.9 3.4 3 23 374 395 372 395 0.96 12 15 2.4e-05 0.0023 19.2 3.1 1 23 401 423 401 423 0.99 13 15 0.00054 0.05 15.0 4.2 1 23 429 452 429 452 0.97 14 15 0.00016 0.015 16.6 1.1 2 23 461 483 460 483 0.96 15 15 4.9 4.5e+02 2.5 0.2 3 20 498 515 497 517 0.86
Sequence Information
- Coding Sequence
- ATGGAGTATGAAATCGAACAAGTCTGTGTCAAATCAGAGATCCAATTGGAGATTAAAGTTGAAGACACTAACCCCCAACAAGCCCCAGAGACTGCGTTCGGAATAAAAGAAGAGACCGATATTGAAGAACCACAGACTGAGACTTCCAGCAGTACCACTGCAGAGATTAATGGAAAGGTCTATGAAAATGGAAAAAGGAATAGACTAAATTGTACTCAATGCGATAGTACGTTTAAGAATAGAGCGAACCTGAAACGTCATCTAAAATTCGTTCACTCGGCAGATGAAGACGCTGTTGAATGTAGTCAGTGTTACCGTACTTTCAAAACTCATAGACATTTGCAATGTCACATTAACTCCGTGCACAAAGAAGAAAGTGAAGTTACATGTGACAAATGTAACAAAGCCTTTCTAAATAGAAGACGGTTGAACAACCATATATTCTATGCTCATCCTGAGCCCGAAGACAGTGTAAACTGCACAGTATGcaaaaaaacattcaaacagCAGTATAATTTGAAAATCCACATGCGGCAAGTCCATAGTTCTGAAAACAACTCCGTACTATGCACACAGTGTAATAAAACATTCAAGAATGACATGCTATTGCAGAAACATGTGAAATGGAGTCATCCTGCTGACGGAATGATGTACCGATGTCAGGACTGTGGGAGAATGCTGCCGTCTATAGCTTGTTACCGGAAACACATGCAAAACGTGCATTCCGGAGCAGATGTTACCTGTAACATATGTTCAAAAGTTTTTAAGACACCCAAAACATTACGTAGACATATTGACCATATACACAGTGGGGAGAAAATTGAGCCGAAGCAATATAAAACGGGAGACATACAATGCTCACACTGTGACAAAAAGTTTGCAACAAACACAGCGTTGTTCTGGCATTTTGAACGGTTTCATTCGGAGAATAAGTTGAGTACGACCTGTGATTTGTGCAAAAAGGATTTGTCTGATCATGCGAGTTTGAAGAGGCATATTGAAATGTGTCATTCAACACAGACGGCTGCATGCCATTTGTGTAAAAAGGTGTTTAAATCCCCGATGAATTTGCAGAGACACATACGAGTGACCCATGCTCCACCAGAAGCTGCCCAAAATTGCGACATTTGCAACAAGTCTTTTAAATGTGCGATGCATTTACGAATACATATAAACACGGTCCATCCTAAAACTGGTTCGTTCACATGTGACATTTGTTCTAAAGAGTTCTCATCAAAGAAATACATGGTCAAACACAGAAAGACTCATGTCGATTCCAAAGAATTTCCTTGTCACTTTTGCCGCAAGATGTTCAAATCGACCAATGACGTCAAGAAACACATAAAAAGAGTTCACAACATACACCTGTACGATTCAAATAAATGTACTATATGCAATACAGAATTCTCTAGTTCCCAAATGTTAGAAAACCATAGATTAAAGGAACATACTGAAGTGTCAAATGAGGTAATTACACCTACCAATAGGAATTGCATGAAATGCGGcaagctatttttatatgacgATGAACTCCATTCCCATATATTAGCATGTGGGACTGACACAGAGATATTAGTTAAAGACTCCCCTAGCCtccaaatattacaaaatcataGATTAAAGGAACATATAGCAATGTCGAATGAGATATCTATATCAACCCATAGGAATTGTATGAAATGCGGCAAGCTATTTTTACATGACGAAGAACTGCATTCATGTGACCCTGAAACAGAGGTATTAGTTAAAGTAGAACCAGATACTGACTCCTCTAGCCCTCAAATGTTAGAAGACCATAAATTCGAAGAACATATAGAAATCACAAATGAAATAACTACTCCTACAAATAGCAATTGCATGAAATGCGGCGACTTATTTTTAGATGATTACAAACTTCATTCTCATATGTTGATATGCACTAAAACAGAGATACAAGTCAAAATAGAATTAGAAGATGACACATGA
- Protein Sequence
- MEYEIEQVCVKSEIQLEIKVEDTNPQQAPETAFGIKEETDIEEPQTETSSSTTAEINGKVYENGKRNRLNCTQCDSTFKNRANLKRHLKFVHSADEDAVECSQCYRTFKTHRHLQCHINSVHKEESEVTCDKCNKAFLNRRRLNNHIFYAHPEPEDSVNCTVCKKTFKQQYNLKIHMRQVHSSENNSVLCTQCNKTFKNDMLLQKHVKWSHPADGMMYRCQDCGRMLPSIACYRKHMQNVHSGADVTCNICSKVFKTPKTLRRHIDHIHSGEKIEPKQYKTGDIQCSHCDKKFATNTALFWHFERFHSENKLSTTCDLCKKDLSDHASLKRHIEMCHSTQTAACHLCKKVFKSPMNLQRHIRVTHAPPEAAQNCDICNKSFKCAMHLRIHINTVHPKTGSFTCDICSKEFSSKKYMVKHRKTHVDSKEFPCHFCRKMFKSTNDVKKHIKRVHNIHLYDSNKCTICNTEFSSSQMLENHRLKEHTEVSNEVITPTNRNCMKCGKLFLYDDELHSHILACGTDTEILVKDSPSLQILQNHRLKEHIAMSNEISISTHRNCMKCGKLFLHDEELHSCDPETEVLVKVEPDTDSSSPQMLEDHKFEEHIEITNEITTPTNSNCMKCGDLFLDDYKLHSHMLICTKTEIQVKIELEDDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -