Oqua018659.1
Basic Information
- Insect
- Oegoconia quadripuncta
- Gene Symbol
- rst2
- Assembly
- GCA_949316235.1
- Location
- OX438750.1:8574821-8590587[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.047 4.4 8.9 0.1 3 23 133 153 131 153 0.96 2 14 0.0026 0.24 12.8 2.8 1 23 279 301 279 301 0.98 3 14 1.4e-05 0.0013 19.9 0.5 1 23 307 330 307 330 0.97 4 14 0.003 0.28 12.6 4.7 1 23 335 358 335 358 0.94 5 14 0.00069 0.064 14.6 0.3 2 23 530 551 530 551 0.98 6 14 7.3e-05 0.0068 17.7 1.7 1 23 557 579 557 579 0.98 7 14 0.023 2.1 9.9 3.7 1 23 634 656 634 656 0.98 8 14 0.0021 0.2 13.1 1.2 1 23 691 713 691 713 0.95 9 14 0.00024 0.023 16.0 1.1 1 23 721 743 721 743 0.95 10 14 0.0014 0.13 13.7 3.0 1 23 752 774 752 774 0.98 11 14 0.00017 0.016 16.5 0.9 2 23 821 842 821 842 0.97 12 14 0.077 7.2 8.2 5.9 1 23 859 881 859 881 0.95 13 14 1.3e-06 0.00012 23.2 0.7 1 23 887 909 887 909 0.98 14 14 6e-07 5.6e-05 24.3 3.1 1 23 915 938 915 938 0.98
Sequence Information
- Coding Sequence
- ATGGATCCGTTAAGTGAATATGACTATTCATACACAACGTATGGCCACGTACATCCAAGCAACGGGTACTTGTACAAtactaatgtaaataatataaaaacagaGTTACCTCAACCGCCACCTGGTATACCCAATTTAGATGAAACTATTCGTAGCCACACAATACACATGCAAATTGAGAGGGAGCCTGATAGCAGAGTAACTGATAACAAAAACGAAATTATCCCACAAAACGTAGAAGAACATGAAaatgcaacaaacaaaaatgaCAAAGAAGATTCAAAGGACGATATTAAACCGTTAATTCAGAGTTTGAAAGGTAGAAAGCATAAACGTGGTAAAACAAGTAGCTATTGGAACAAGAAGATAAGTGACACAAATTTTCCGTTTTATGGTTGTACAATATGCAATATAAGTTTTACGGCAATACAAGAATTAGATCAACATATAACCGTGCATAAGGGGAGGTTGACCAGCTACGATTTGAgattaaaaaatcaattaaagaAGAAGTTGCTGAAAAGAGAACAGAAAAAGCTTAAGAAGCTAGGGAAGAAAGTGAAGACGGAGTTTGAGGAAATAGAAATTAAACCCGAAGATGGGTATATAGGCAATGAAACAGCGTCTGACTTTTTAAATAACACAGTTGAAAAGCAGGACAATAAAAACGTTATATGTGATAGTGAAAATAATGTACAAGGCGATGGGAGTAAACAGGAAAACGACAGTCGGAGCAATGGTCAAAATAAAGATAACCTTAGTTCGAAATCACAAGAGATCATGCAGCAGTACAAAGAGATACTGCAGCCTCAGGATCCCAGATTGCACAAACTCTTCAAATGCTTTGCCTGTCAGAAGCAGTTTTCGTTGAGCTATTATTTGAAATTGCATGTCAGGTCTCATACagATGAAAAGCCCTACACTTGTGCGGAGTGCGGACAATCGTTTATAACAGCAAGCAAACTGAGCAGGCACAACAAGAGGATTCACCTGGCCATCCGCTACCAATGTCGGATATGCTACAGATTCTTCTCTagATTTGATTATTTAACGCGGCATTTCGACAAGAAACATCCCGATGATAAACTGGAAGGCGAGCCTTACGATTACAACGCTATATTACCATATCTGAAGGAGTTGGAGGAACAGTTGAAGGATAAGTCTCTGACCAAAGAGGAGAAGCCCAAGACTGAAGACTTGTGGTCTGACTGGCCTATCATGGACCATATTCCACCCCATCCTACGGAGCCCATCGCGGGTCCCATCATGCCCGTCGCGGAACCCAAGAACGACACCAAGGATGAGGTGGACAACAAGGACTTCACAGAAGAGCACGTGGATGTGGTCGTTGAAGTGCCAGTGGTCAGTTACGAGTATGAATTGGAAATAAAGAAGGAAGAAGTGGAGGACAATGATGCTGATGAAAATGATGTCAAGGACCATAGCTTTCAGGATGATAACTTCAAAGACGACTGCGGCTCAGACTCCGACTACTTCCCGCTGAACACGTGGGCCTCAAAGCCCAAAGTAGAGCCCGAGCAGGCGGTCGCCCTTCGCCGTCGGTACAAGCGGTCAGAGTTCCCGCGACAGTGCGAGCTCTGCGACAAGATTATTAACTCTGCTTCCTATATGAAGGTCCACCTTCGCACGCACACCGGTGAAAAACCCTTCAAGTGTTACATCTGTGGTCGCGGCTTCATCACATCGAGTAAGATGCATCGACACGTGCTCATTCACGAGGAGGCTTTGAATGAAGATGGTGATGATGTAAAGGAAGAAGTGAAACAGGAAGACGGTGATGGAGAGGAAGGCAAAAAGAAAGGCAGGAGAAAATCGAGGGTACCCAAGGAGCTGGCGAAAGGAGCGAAGAGACGTAGGAAGGGCCACCAGAAGCGGCCATATATGTGTCCGTTCTGCAACAAGCGGTTCCTTCACAAGGAGACTATGGAAGTCCATAAGAAATCTCACGATGGTGAAGAGATCATACTGAAATGTAACTTCTGCCTTGAGGTGATGGAAGATGATGCGGCCCTGGCGTCCCATGAAGCCACTCACACCGGCCCTAAGCCCTACCTCTGCACCTTGTGTGGGAAGTCTTACACGAAGAGGGAGTCCATGGTGTACCATAGGAAGGGTCACGACGAGAAGGAGCGCAAGGAATTCGTTTGTGATATGTGTCCGAAGACCTTTAACGCCCAGTGCAAGCTTCAGAGGCACATAGTAGGCCACAGGGTGGACAAGTTCGTGCTGCGGTACGAGTGTCCGGTCTGCGCCCATATGTTCAACACCAAGTACCACATACAGATGCATCTGTCCACGCACCAGAAGGAGGGGCTAATCCTAGAAGAGAACCGCAACGAAATCCTAGCGATGGTGATGCAGAACGCCAGGAAGATACCGAGGAAAACGGAGAACCCAGTCACCACCTTCCCCCCAATACCATCTGACGAGCGGTCCCGGGTGTGCAACATATGCGGCCAAGTGTTCCAACACTTCTACTACCTCGAGGAGCATCTCAAGAGTCACGGCTCAAAAATCGCTTTAGAAGACGACTCCAAAGAGGAGGAGAAGAAGCATATATGCAAAGTTTGTAACAAAGGCTTTAAGCTGCATTATTATTTAAAGCTTCACAATTTCACACACTCAAAAGAAAAGCCGTATATATGCCAGCAGTGTGGCAAAGGCTTTATAACTAAGGGCAAGTTGAAGAGGCATCTGGAAACGCATTCGGGGCTGAAGAAGTACCAATGTCATATCTGTTACAAGTTCTTCACTAGGCCAAGTTATTTGAGGATCCATGTTAGGACTATTCATGGGACGCAAGATTACAATTTTAGGTTAGATAAGGGTTATATGCCGTTGTTGGGTAGTGTATGA
- Protein Sequence
- MDPLSEYDYSYTTYGHVHPSNGYLYNTNVNNIKTELPQPPPGIPNLDETIRSHTIHMQIEREPDSRVTDNKNEIIPQNVEEHENATNKNDKEDSKDDIKPLIQSLKGRKHKRGKTSSYWNKKISDTNFPFYGCTICNISFTAIQELDQHITVHKGRLTSYDLRLKNQLKKKLLKREQKKLKKLGKKVKTEFEEIEIKPEDGYIGNETASDFLNNTVEKQDNKNVICDSENNVQGDGSKQENDSRSNGQNKDNLSSKSQEIMQQYKEILQPQDPRLHKLFKCFACQKQFSLSYYLKLHVRSHTDEKPYTCAECGQSFITASKLSRHNKRIHLAIRYQCRICYRFFSRFDYLTRHFDKKHPDDKLEGEPYDYNAILPYLKELEEQLKDKSLTKEEKPKTEDLWSDWPIMDHIPPHPTEPIAGPIMPVAEPKNDTKDEVDNKDFTEEHVDVVVEVPVVSYEYELEIKKEEVEDNDADENDVKDHSFQDDNFKDDCGSDSDYFPLNTWASKPKVEPEQAVALRRRYKRSEFPRQCELCDKIINSASYMKVHLRTHTGEKPFKCYICGRGFITSSKMHRHVLIHEEALNEDGDDVKEEVKQEDGDGEEGKKKGRRKSRVPKELAKGAKRRRKGHQKRPYMCPFCNKRFLHKETMEVHKKSHDGEEIILKCNFCLEVMEDDAALASHEATHTGPKPYLCTLCGKSYTKRESMVYHRKGHDEKERKEFVCDMCPKTFNAQCKLQRHIVGHRVDKFVLRYECPVCAHMFNTKYHIQMHLSTHQKEGLILEENRNEILAMVMQNARKIPRKTENPVTTFPPIPSDERSRVCNICGQVFQHFYYLEEHLKSHGSKIALEDDSKEEEKKHICKVCNKGFKLHYYLKLHNFTHSKEKPYICQQCGKGFITKGKLKRHLETHSGLKKYQCHICYKFFTRPSYLRIHVRTIHGTQDYNFRLDKGYMPLLGSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -