Oqua024102.1
Basic Information
- Insect
- Oegoconia quadripuncta
- Gene Symbol
- -
- Assembly
- GCA_949316235.1
- Location
- OX438754.1:5836433-5839824[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.2e-05 0.0067 17.0 0.0 6 36 2 32 1 35 0.89 2 3 1.8e-06 0.00054 20.5 0.0 2 38 68 103 67 108 0.89 3 3 1.5e-05 0.0046 17.5 0.0 2 40 143 180 142 180 0.93
Sequence Information
- Coding Sequence
- ATGGAAATAGCTCTTGCAGCTGTAAAAGAAGGCATACCGTACAGAATGGCTAGCAGAGTTTTCGGGGTGCCCCCGATGACTCTATGGAGAAAAGCGAATTCAGATCCATGTATTCTACAGACTATTCAAGCGAATAGGAAGACTGcacGTCTTGTCCAGAAAAAGAAAGGCAGGCAACCTAGACCACGAATCTGGGATGGAGAAACAGCCATGAACATGGCTCTTACAGCTGTTAAGCGAGGCACAACATACGCAATGGCTAGTAGAGTATTCGGTGTGCCCCAAACAGATATATGGAGAAAAGTGAAATTAGGTCTACATAATCTAGAGCCCCAAAATGTCCAGGTCATCGAAGCGGATAAAAATGATGCTGcAATACCTGGGCCTAAAAAGAGGGGCAGGAAACCTGGACCAGTTGCTTGGGATGAAGCAACCATGAGTATCGCTGTGAGTGCCGTTAATCAAGGCATGGCTTATAAAGAAGCAAGTACATTGTTCAAATTACCCGTGATGACGCTTTGGAAGAGACTGAATAGGAAGTGA
- Protein Sequence
- MEIALAAVKEGIPYRMASRVFGVPPMTLWRKANSDPCILQTIQANRKTARLVQKKKGRQPRPRIWDGETAMNMALTAVKRGTTYAMASRVFGVPQTDIWRKVKLGLHNLEPQNVQVIEADKNDAAIPGPKKRGRKPGPVAWDEATMSIAVSAVNQGMAYKEASTLFKLPVMTLWKRLNRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -