Oqua025891.1
Basic Information
- Insect
- Oegoconia quadripuncta
- Gene Symbol
- -
- Assembly
- GCA_949316235.1
- Location
- OX438756.1:1062443-1076386[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.3e-10 2.2e-07 31.4 0.0 4 39 170 206 167 210 0.89 2 4 3e-11 9e-09 35.8 0.3 3 39 223 259 221 262 0.93 3 4 4e-14 1.2e-11 45.0 0.1 2 45 277 321 276 321 0.96 4 4 4.8e-18 1.4e-15 57.6 0.0 1 43 328 371 328 372 0.96
Sequence Information
- Coding Sequence
- ATGCCCAGTTACGGTAACTCTCAAGTGAAATGCGAGCCATCATCAGAAGAAGACGACAGCAACTCCCAGTACAGCTACATAAATAGTCAGcTGACGTCATCAGATTTCCGTCCCATCAAATTAGAGAAAGAGAGTGCGAGCGATGAACGCGTGTCGAGTCATCTATTGCAGTTGCAACATCTACAGGGAACCGACGGTCTGGAGGAGCTGGGTCCACTATCGCCAGCGGCCCCGGCTGCGACACCAGTATGCGTTAAGCAAGAGCCTGCGGACGCGCCGCCAGCGACGCTCGCGACGCTCGAGTCCACACCGCACGCTAACACCATGAGGTCCACGCTGATCGACCGCATGATGCTAAACGCGTCCGAAGTTCCTGACTCCTCAGACTTTATGCCGCTGTTAGCTATCAAAGACGAACCATTGTCCGAAGGAGAACAACACGGCGACGAGGCAAGCGACACACAGCGTGAGGCGTCCCGAGGGAGCCCTAAGGGCTGGACGCAACAGGATATGGATAACGCATTAGAAGCGCTCAAGAACCACAACATGAGTCTCACCAAGGCGTCAGCCACCTATGGTATTCCATCAACAACTTTGTGGCAGCGTGCGCACCGGCTGGGCATCGACACTCCCAAGAAGGAAGGCGGCGCCAAATCGTGGGCCGACGCTGATCTACGGAGGGCTCTGCACGCTCTGCGAGCTGGCGCTATATCCGCCAATAAGGCTAGCAAGGCCTACGGCATCCCCAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGGATCCGCCTCGCCGCGCCCTTCAACGCCGCGCCCACCGCGTGGCGCCGCGCCGACCTGGCGCGCGCGCTGCAGGCCATCCGCGCCGGCCACAGCTCCGTGCAGCGCGCCGCCGCCACCTTCGGCATCCCCACCGGTACACTTTACGGCCGATGTAAGAGAGAAGGCATCGAGCTGTCTCGTTCTAATCCAACACCATGGTCAGAAGACGCTATGGGGGAAGCACTAGAAGCTGTAAGGGTGGGGCAAATGTCCATCAATCAGGCGGCGATCCACTACAACCTGCCTTATTCCTCGCTCTATGGACGGTTCAAGCGGTGCAAATATCAAACGCAGGGCATACCTCCACTCCAGCAAGATCCTCAGAAACCCCATGAAATGGACCAACATTTGCAAGAACCACACCACTACTATCAATCGATGCCGCCCCCTGAAGACCACCCTATACAACAGTCGTACATACAGCCGATGTCAGAACATACAACATTCGATATTAACGACTATAGTCCGATGTATTATGCGAGCTGCAATATGGCCAGTTGA
- Protein Sequence
- MPSYGNSQVKCEPSSEEDDSNSQYSYINSQLTSSDFRPIKLEKESASDERVSSHLLQLQHLQGTDGLEELGPLSPAAPAATPVCVKQEPADAPPATLATLESTPHANTMRSTLIDRMMLNASEVPDSSDFMPLLAIKDEPLSEGEQHGDEASDTQREASRGSPKGWTQQDMDNALEALKNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGGAKSWADADLRRALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALQAIRAGHSSVQRAAATFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQTQGIPPLQQDPQKPHEMDQHLQEPHHYYQSMPPPEDHPIQQSYIQPMSEHTTFDINDYSPMYYASCNMAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -