Ospi009867.1
Basic Information
- Insect
- Odynerus spinipes
- Gene Symbol
- Prdm15
- Assembly
- GCA_032403825.1
- Location
- JAIFRP010000705.1:589548-592273[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.1e-05 0.0007 19.7 3.4 1 23 259 281 259 281 0.98 2 12 0.0035 0.22 11.8 3.4 1 23 286 308 286 308 0.97 3 12 2.6e-05 0.0017 18.5 0.6 2 23 318 339 317 339 0.96 4 12 0.00041 0.026 14.7 9.4 1 23 433 455 433 455 0.98 5 12 0.0018 0.11 12.7 1.7 1 22 460 481 460 484 0.90 6 12 2.7e-06 0.00017 21.6 0.8 1 23 523 546 523 546 0.95 7 12 8.3e-07 5.2e-05 23.2 1.3 1 23 579 601 579 601 0.98 8 12 0.00017 0.011 15.9 4.0 1 23 615 637 615 637 0.96 9 12 0.00016 0.01 16.0 4.7 1 23 643 665 643 665 0.98 10 12 0.0014 0.091 13.0 3.2 1 23 671 693 671 693 0.98 11 12 4.9e-05 0.0031 17.6 6.5 1 23 699 721 699 721 0.98 12 12 0.00023 0.014 15.5 0.3 1 21 727 747 727 748 0.93
Sequence Information
- Coding Sequence
- atgacaGACCGAGATACCAATTTATGCCGCATTTGTCTCTCGTCAAGTAATGATAATCAATGCATCTTTACCACGAATCAGAATTATTTTAGAGACAAGACTGCACTCGATTTGTCGGAGAAGCTACGGTTATGCGGTGGTATCGAGGTTGTGAAAAACGACGGGTTGCCCGAACATATTTGTACGAAATGTATTTTGAAAGTCAATGCTGCCCACGAGCTCAGGGAACAATGTCAACGAGcagatataaaattaagagAATTGTATGGCAAGGTGATAAAGAAAGATGACCTTTTAAAACATGCgattgtaaaaGATCAATATTGTCAGACTGACGAACATTTTTTAACtcaaatgaaagaagaagatagttatacttttttacataataatctGGAAGCTTATAATAAAGATTCgtttctaaatttaaaaagtacaaTTAGTAAGGATGATGATATTTCTCATAATGGAAACAAATCTATCAATGATTTTAAGTCTAATAATGAACAAACACAGGatattgataataaatatgagCAATCAATGCAAGAAGTAACTGTTGTTAAAAGAGAAGCTTATCGTACAAGAAGGCTGACCATGTTTAAAAGGGTTACTTCCatggaaaatttaaaaaatcacaaagAAAGGCAAAGAcaatacataaagaaaaatggaaatacaAAACACGATGCTattgaaaaagattcattATTAAACATAGAGAATCCATGTAATAAGATAAACCGAGTTTCCACTATAGATACTGAATTAGCTTTTGAATGTCCACATTGCAAAAGGTATTATtccaataaaaaatctttagaGAGACATGTATTGACCCATAATGACAAAAAATTCAAATGTGAGAAATGCGATAAACAATTCTTTCACATTGATAAATTACTTCAACATGGCAAGCTCCATAGACCAAAGGAAAAATCTAAATTGATAccatgtaaaatatgtaataaaagttttagGAAAACTGATACTATGGTAAGACATTTAAATGTTCATAAAAGAGCTAATCCTAAGGAAGTCTTTACTATACTAAAAGAAATTAGGGATAGAAGAAAACTGGAAAATAACATACAATCTTTGGAAATGAATAAtcaaatttctattaaaaaggaagatacagcagataaaaaattaagaaatagtGTTGGTAACAGTATGATAAAAGatttacaaaaacaaatatCCGACACAGATGACAAATTTGATAATGTATACACATCAAATTCCGATTCCAATAGTGATAATAAATCTGATTCTCTTGACACTGTAGCACTTTATCATTGCAAACATTGCACCAAGTGTTATTCTACAGAGAGATCTCTTCAGCGTCACCTGTTAATGCacaatgaaaaaaagtttgtTTGCAATGTTTGTAATATGAAATTCTTTCGGCAAGATAGACTTAAAAGTCATAGAGACAGGTATGGACATGACGAAGATAAAGATTGTTCTATACCTCAAAAACCACCTGATGATAAGTCAGCAATTAAGTTAATAAATAGCTGGATTAGAGAAGAATTAGATTCTGATAACGAAGGGAAGGGCTTTCCATGTAATATTTGTGGTAAATCATATGATACAAAGAAATCATTATTAAAACATCAGACAAATGTACATGATgtacaagaagaaaattgtgTGAATTGCGGTAAGAATTGTACGTGTATTGTGAAGTATAAAGGAGCCCAAAAAAGTGATCAGAAACTAAAGAGCTTTACATGCGACGaatgtaataaaacttttgaaaaagaaataaagttgCAGAGGCATATGCGAATACATGAGCGTACAAAAGAACAACAAGATTcaaattttaaacgatttttgtGTCACATATGTAGTAAAACTTTTAGACAAAATACAGGTCTCATGTTTCATATGAGAACGCACACTGGATATAAACCTCATGTGTGTAAATATTGTGGGCGAGGATTTACATCAAATTCAAATTGTATTAATCACGAAAGAACGCATACCGGTGACAGACCATTTGTTTGCCACTTTTGCAGTGCTGCTTTTGCTAAATCTTGTACTCTTAAAGCGCACATTACTACCCATACTGGTGAGGCAAATTATCACTGCAAAACTTGCGGTAAGTCTTTCAGAAGGCTAAAGTATTTGAAAGAACATAGATTTACACATACAGGAGAAAAACCATATGCGTGCAAAATATGCGGCACTGCTTATAGTCATTCTGGCAGCTTATTTGTGCacgaaaagaaatgtaaagctcagtataataattatcagtCTTCGACAATTCAAAATTCACAGAATTACTGTCAACCTCAAGCGAGTATTTGCACGGCTACACCAGTCATTACTCCTATCATTTCTACAATGCCACAGTCTCACTTAAACAGTGTAAATAGTACTTTAGGATCACAAACGAATAAAACTTATGTCGATGGCATTCAAAGAATGAATGCGcatgctgctgctactgcggCTGTAGTTGGTACTTCTGCATTACATGTGCATCCTAGTCCGGATATCCCAGACGTAGCATCAGCAGTAAGAAATATTGCTATTATTGGCCAAGTCTTTTACTCCTAA
- Protein Sequence
- MTDRDTNLCRICLSSSNDNQCIFTTNQNYFRDKTALDLSEKLRLCGGIEVVKNDGLPEHICTKCILKVNAAHELREQCQRADIKLRELYGKVIKKDDLLKHAIVKDQYCQTDEHFLTQMKEEDSYTFLHNNLEAYNKDSFLNLKSTISKDDDISHNGNKSINDFKSNNEQTQDIDNKYEQSMQEVTVVKREAYRTRRLTMFKRVTSMENLKNHKERQRQYIKKNGNTKHDAIEKDSLLNIENPCNKINRVSTIDTELAFECPHCKRYYSNKKSLERHVLTHNDKKFKCEKCDKQFFHIDKLLQHGKLHRPKEKSKLIPCKICNKSFRKTDTMVRHLNVHKRANPKEVFTILKEIRDRRKLENNIQSLEMNNQISIKKEDTADKKLRNSVGNSMIKDLQKQISDTDDKFDNVYTSNSDSNSDNKSDSLDTVALYHCKHCTKCYSTERSLQRHLLMHNEKKFVCNVCNMKFFRQDRLKSHRDRYGHDEDKDCSIPQKPPDDKSAIKLINSWIREELDSDNEGKGFPCNICGKSYDTKKSLLKHQTNVHDVQEENCVNCGKNCTCIVKYKGAQKSDQKLKSFTCDECNKTFEKEIKLQRHMRIHERTKEQQDSNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNNYQSSTIQNSQNYCQPQASICTATPVITPIISTMPQSHLNSVNSTLGSQTNKTYVDGIQRMNAHAAATAAVVGTSALHVHPSPDIPDVASAVRNIAIIGQVFYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -