Ospi010744.2
Basic Information
- Insect
- Odynerus spinipes
- Gene Symbol
- -
- Assembly
- GCA_032403825.1
- Location
- JAIFRP010004357.1:3364934-3367312[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00013 0.008 16.3 1.6 1 23 307 329 307 329 0.97 2 12 0.0036 0.23 11.7 4.0 1 23 333 355 333 355 0.98 3 12 0.0015 0.098 12.9 5.4 1 23 360 382 360 382 0.96 4 12 0.00084 0.053 13.8 5.4 1 23 434 456 434 456 0.97 5 12 0.00083 0.052 13.8 1.4 1 23 461 483 461 483 0.97 6 12 0.0001 0.0066 16.6 2.2 1 23 532 554 532 554 0.98 7 12 0.0003 0.019 15.2 0.9 2 23 562 583 561 583 0.97 8 12 1e-06 6.5e-05 22.9 2.1 1 23 593 615 593 615 0.96 9 12 0.00023 0.015 15.5 1.6 1 23 621 643 621 643 0.97 10 12 0.00017 0.011 16.0 0.7 1 23 649 671 649 671 0.98 11 12 5e-06 0.00031 20.8 2.0 1 23 677 699 677 699 0.96 12 12 8.8e-05 0.0056 16.8 0.3 1 22 705 726 705 726 0.96
Sequence Information
- Coding Sequence
- ATGAGCGCTAAAATTGTGAAAGGCATGAATTCAAGTTTCTTCAATTTACCTCTTAATATGGACAGAGTATGTAGAATCTGTTTAACAGAAAGCAGTAATTTATCACCCATTTTTTGTACCGACCAAGAGGTAGATGATTTCTCAGATCTTCCACAAAAGATTCAAGTATGTGGTTCAATCGATATCCACGAGCAAGATGGATTACCTTCTTTAATTTGCGATGTTTGTGTTTACAAAGCAAGCGTCGCACATGAGTTTAGACAACAATGTCAACATTCCAATACTAAGCTGAGAATGTATTACAATAAACCAGAAAAATGCAATGTCATGGATTCTTGTACACAAACAGATTTACCTTCGTGCATTGAACCAGCAAAAAAGACAACAAATGTGCAAGACAACGattttgtaaaagaagaaatgcaAATAGTATCAAATTCTCAAGACTTCAACAACACTGATAATACTTATACTCCAAATACATCTAGTCTTACTCCTCCTGAAATTGATATTCAAGATGACAAGATTTTCATGTGCTCCATTGGCTTTGAAGGTCCTAAGGAAATTGGAAAAGAACAATGTTCGACAGAAAGtaatattaatcataattCATCCATTGAATCTGCTTCACAGGCAGATACGTGTGATATATATGAAGCAATGGATGTACATGAAAAGCCTCAAGAGGATCATGATACTTCTAAAGATTCACAGAAAGATTCTAaagaacaaagagaagaacaaTTTTCAAATGAACATGTATCCGACGATACAGGGACAGAAATGGAAGCATTTCCACAAAAACGTACTTCtgcaagaaaaacaaaatcaatGCCAAACAAGGTTTACAGCGAAGATGAAGGAGATGATAATTACTATGATCAAAGTAGCGACAGTCAAGATTCAGAAGAATTGAagtttaaatgtaaaatttgtcTGAAGCGTTATGCAACGCAGAAAGGCttaaaaaaacattctctTGTTCACGAAAAAAAGCACAAATGTAATATTTGCTTGaaactattttataaacaagaaaatatggagaaacataaaaaaatacacgcATCCAAACCTCATGCTTGTCAATTATGTCATGCCTGCTTTTCAAAACCTCAAAGCCTTGTACGTCATTTAAAGTCTCATACAGAGAAAGTCAATGATatgattaaacaaataaatacggatgaagaaaaagatgatgtaaattcgaaaaaagaacCAAAGTGTGAAGATGACACTGAGGATGAAAGCGGTACAGTAAACGAGCCAGATGAATTTGAAAATGCACCTGAATTACATAAATGTGAGATCTGCAATCAGTATtgttcttctttaaaaaacttaaaaagaCATACTCTTGTGCATGGGGATAAAAAGTATTCTTGTACAGTATGTAAGAAATGGTTTTTCAGACCAGATACATTAAAGAAACATGCTGAAAAGCATGGACATGGATTACTAGATAATCTAGTAGATGATAACAAACTATTTGATTCGGACGACGATACATTTCCAAACGATACAACAAATAATTTGCCAGAAAATGAAactgttaaaaaagaagatagcgAAGAAGATGGATCTGGTGAATACAAGTGTCAACATTGTGATAAAGTCATGGCTACCAAGAAAGGTCTTAGGCGCCATGTTTCCATGCATAAGCCTAAAGCTGAACCAGTAACTTGtgaaatttgtagaaaagtCTGCGCTAGTCAAGCCCGCCTCGTTCTTCATCAAAGGACACATAAACCCAAGGAAAAAGTGCCACGAGAATATCTATGTCATATTTGTAGCAAGGTATATCCAAGTAATTCGTCGCTTACATACCATATGAGAACTCACACAGGAGTGAAACCACATGTATGCAAAACATGTAACAGTGGATTTACAACGACTACTAGTTTAGCAAATCATATTCGTATTCACACCGGAGATAAACCTTTTGTGTGTCATGTTTGTAGTGCGGCATTTGCTGTAAGTTCAGCATTTAGAAGACATTTGACACGACATACAGGCGAAGCAAATTATCTCTGTAAAACATGTGGCAAAGCTTTCAAGCGGCTTAGTACTCTGAAAGAACATACTTATACTCATTCTGGTGAAAAACCATATGTTTGTAAAACTTGTGGTGCCGCGTATAGTCATAGTGGCAGTTTATTTGCACACCAGAAACGTTGTCGTGTTCAATATGGTGAAATGGTAGTAGATGAACATCATCATGCCGTTGCACATCATATTCATGTAAATAATGTGCAGTCTGCGGTAAGATCGCTTACTGTGATAGGGCAGAtgttttaa
- Protein Sequence
- MSAKIVKGMNSSFFNLPLNMDRVCRICLTESSNLSPIFCTDQEVDDFSDLPQKIQVCGSIDIHEQDGLPSLICDVCVYKASVAHEFRQQCQHSNTKLRMYYNKPEKCNVMDSCTQTDLPSCIEPAKKTTNVQDNDFVKEEMQIVSNSQDFNNTDNTYTPNTSSLTPPEIDIQDDKIFMCSIGFEGPKEIGKEQCSTESNINHNSSIESASQADTCDIYEAMDVHEKPQEDHDTSKDSQKDSKEQREEQFSNEHVSDDTGTEMEAFPQKRTSARKTKSMPNKVYSEDEGDDNYYDQSSDSQDSEELKFKCKICLKRYATQKGLKKHSLVHEKKHKCNICLKLFYKQENMEKHKKIHASKPHACQLCHACFSKPQSLVRHLKSHTEKVNDMIKQINTDEEKDDVNSKKEPKCEDDTEDESGTVNEPDEFENAPELHKCEICNQYCSSLKNLKRHTLVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDDNKLFDSDDDTFPNDTTNNLPENETVKKEDSEEDGSGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCEICRKVCASQARLVLHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYGEMVVDEHHHAVAHHIHVNNVQSAVRSLTVIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01513638;
- 90% Identity
- iTF_01513638;
- 80% Identity
- -