Basic Information

Insect: Odynerus spinipes
Gene Symbol: -
Assembly: GCA_032403825.1
Location: JAIFRP010004357.1:4440514-4442914[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 9.7 6.1e+02 1.0 0.2 1 19 355 373 355 378 0.73

2 10 0.0097 0.61 10.4 3.2 1 23 385 407 385 407 0.97

3 10 0.0012 0.078 13.2 3.9 1 20 413 432 413 435 0.96

4 10 2.8e-07 1.8e-05 24.7 1.4 1 23 441 463 441 463 0.98

5 10 2.6e-06 0.00017 21.6 2.1 1 23 469 491 469 491 0.98

6 10 4e-06 0.00025 21.1 0.6 1 23 502 524 502 524 0.98

7 10 1.2e-07 7.8e-06 25.8 1.2 1 23 530 552 530 552 0.99

8 10 3.9e-06 0.00024 21.1 0.5 1 23 558 580 558 580 0.97

9 10 2.8e-05 0.0018 18.4 0.0 1 20 586 605 586 608 0.94

10 10 2.6e-05 0.0016 18.5 0.4 3 23 616 636 614 636 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	9.7	6.1e+02	1.0	0.2	1	19	355	373	355	378	0.73
2	10	0.0097	0.61	10.4	3.2	1	23	385	407	385	407	0.97
3	10	0.0012	0.078	13.2	3.9	1	20	413	432	413	435	0.96
4	10	2.8e-07	1.8e-05	24.7	1.4	1	23	441	463	441	463	0.98
5	10	2.6e-06	0.00017	21.6	2.1	1	23	469	491	469	491	0.98
6	10	4e-06	0.00025	21.1	0.6	1	23	502	524	502	524	0.98
7	10	1.2e-07	7.8e-06	25.8	1.2	1	23	530	552	530	552	0.99
8	10	3.9e-06	0.00024	21.1	0.5	1	23	558	580	558	580	0.97
9	10	2.8e-05	0.0018	18.4	0.0	1	20	586	605	586	608	0.94
10	10	2.6e-05	0.0016	18.5	0.4	3	23	616	636	614	636	0.98

Sequence Information

Coding Sequence: ATGGGCTGGGAAGTTTGCTGCAGGAATATGTGTCGTGCGTGCATGCAAATCGATGGGGTGCTTTTGCCGATGTACGATGACGACACGATTAGCAGCAAAAATTTACCTGAAAAACTTACCGAACTTACATCGGTCCAGATTAATAGATATGATGGATTACCACACATGCTTTGTGCTAAATGTGCTTATCGGACCATTGCCTTTTATGATTTTAAGTTACAAGTACAAGCGACAGAAGAGAAACTTCGAAAGATGTTTGAAACGCAAATAGAGGATATAAAGgaagaggtagaggaaAATGGACACGAAGAATTCATAGTACCAACCAAAGAATCTGCGGAAAAAAGGATTCTGCTAGATGTTTCTCAAATTTTTTCTCCTGGTTATGGAACTCATATGGATATAGAATTAAACAAAACATCTAAAGTAAGCAACAACGAAGGAGAACAACATTCGACAATAGTATCATTTATGGATTTAAATCAAAACACAGATACAGATAAAAAGCAAGATcatctaaataaaattattggtGTTGATCAGCAAGGTAAATTATATAGTATTAATAGAGAATTAACTAATCAAGCTTGCGATATCGCTGACTCACGCTATTCAAATTACACAGTAGTATATATAGCCAATACAGGAATGAAGCCTATTAAATCAGAGAACGATAgtaatttttgcaaattgaaaatagaaaatgatagtattaaaagaGAATCTTGTAAAGAAAGTTATGAGGAATGTAGGAATAATGATGAATTTCcaaatgaaatatacatatccGATGACACAGAATCAAAGAGTGCTAAAGCCTTAAGTATCGAAAGCGAAACTTGGCAGTTGGTTTTGTCGGATGGATCGGTAATAAAAGAGCAggataacaaaataaaagaggatGATCGCAAAGGTCGTAATATTGAAGAAAATttagaagtaaaagaaagcgATGGTTCTGACTCTGATTATTTCATTGATCCTAAAGATAACATTTTAGGAAGTTTAAACGATACAATAACTAGaatcaaagaaataaaaactcAAGATAATGTAATACAATATCAGTGCACCTTATGTTTGCAGAACTATGATAAACTCACAGGTATTTTGCTTCATACTATAGATAATCACATCCCAAGTAGCGGTCCATTTTTTTGCGTCGTATGCGAGAAGGATTGCGATAGTCATAGAGAACTGAGAGCTCATGTAAAAACACATACGGGACAGTTTCCATATTCCTgttttatatgtaataaagcTTATACCTTAAAGAGGTATTTAAAGAGACACATGGTTTGTCATACCGATTTTCCGAGGCATCGTTGTCCAAAATGTGGCATAAGGTTTAAGACAAAATCTGAATTAGAAAATCACGTTATAACGCACGTGCATGGAGCACCGTATGCGTGTAGTCAGTGTCCTCGAGTGTTTAACCACAAAGGCAACTATAAAAGACACTTAATTACGCATTTGGATCCTCAAGGGCTTCATTTACCCAAGTACCCATGTACCGTTTGTGGGAAACGGTTCTTGAATAATCGTACTTTAGAAACTCACATGCGTGTTCACACAGGCGAAAAGCCATTTAAATGCAACATATGTAGCAGACGTTTTTCACAACAAGGAAATCTTTTGAATCATTTACGAATTCATTCGAATCCTCGAAGTTATACTTGTGAAGTTTGTGGGAAGAGATTCAATCAGAGGGCTACATTGAAAGATCATAGTCTTATACACACTGGAGAAAAACCTTACATTTGTAACGTCTGCGGAATCGCGTTTACGTTTAGCGCAGCATTGAGACGTCACATGTGGATTCACGCCAGCGGCAAACCTTTCGGCTGCGAAATTTGTAAGGCACGTTTCGTAGGAAAATACGACTTGAGGCGTCATATGAAGATTCATAGCGATAGACCAAGAGCGAGGCAAAGGAGAAATTTAGGAAGAAACAGTAAtacggaagaagaatcgagagaagaTGTTACAACCGCGGAAGAGGCAGACACGGAGACTGTTCTCATAGAACAAGTTCTTTTAAATCAAGATGTTACGCAAGTTATTCCGCAGGAAGaggcagaaaaagagaatgtagATGCACTCTTTAATCTTATACAATATGGTTAA
Protein Sequence: MGWEVCCRNMCRACMQIDGVLLPMYDDDTISSKNLPEKLTELTSVQINRYDGLPHMLCAKCAYRTIAFYDFKLQVQATEEKLRKMFETQIEDIKEEVEENGHEEFIVPTKESAEKRILLDVSQIFSPGYGTHMDIELNKTSKVSNNEGEQHSTIVSFMDLNQNTDTDKKQDHLNKIIGVDQQGKLYSINRELTNQACDIADSRYSNYTVVYIANTGMKPIKSENDSNFCKLKIENDSIKRESCKESYEECRNNDEFPNEIYISDDTESKSAKALSIESETWQLVLSDGSVIKEQDNKIKEDDRKGRNIEENLEVKESDGSDSDYFIDPKDNILGSLNDTITRIKEIKTQDNVIQYQCTLCLQNYDKLTGILLHTIDNHIPSSGPFFCVVCEKDCDSHRELRAHVKTHTGQFPYSCFICNKAYTLKRYLKRHMVCHTDFPRHRCPKCGIRFKTKSELENHVITHVHGAPYACSQCPRVFNHKGNYKRHLITHLDPQGLHLPKYPCTVCGKRFLNNRTLETHMRVHTGEKPFKCNICSRRFSQQGNLLNHLRIHSNPRSYTCEVCGKRFNQRATLKDHSLIHTGEKPYICNVCGIAFTFSAALRRHMWIHASGKPFGCEICKARFVGKYDLRRHMKIHSDRPRARQRRNLGRNSNTEEESREDVTTAEEADTETVLIEQVLLNQDVTQVIPQEEAEKENVDALFNLIQYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01512336;
90% Identity: -
80% Identity: -