Ospi011554.1
Basic Information
- Insect
- Odynerus spinipes
- Gene Symbol
- ECU06_1150
- Assembly
- GCA_032403825.1
- Location
- JAIFRP010004406.1:1586647-1589351[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2e-05 0.0013 18.8 1.2 1 20 24 43 24 45 0.95 2 18 0.078 4.9 7.6 1.0 1 23 108 131 108 131 0.95 3 18 7e-05 0.0044 17.2 1.4 1 23 163 185 163 185 0.98 4 18 7.2e-06 0.00046 20.3 2.5 1 23 191 214 191 214 0.97 5 18 2.6e-05 0.0016 18.5 1.3 1 23 220 242 220 242 0.98 6 18 2.3e-08 1.4e-06 28.1 1.9 1 23 248 270 248 270 0.98 7 18 0.00022 0.014 15.6 4.0 1 23 276 298 276 298 0.98 8 18 0.00014 0.0089 16.2 5.6 1 23 304 326 304 326 0.95 9 18 0.00017 0.011 16.0 1.3 2 23 333 355 332 355 0.94 10 18 0.00077 0.049 13.9 0.3 2 23 388 410 387 410 0.96 11 18 0.0014 0.088 13.1 9.6 1 23 487 509 487 509 0.98 12 18 0.00063 0.04 14.1 2.1 1 23 537 559 537 559 0.99 13 18 0.00031 0.019 15.1 2.2 2 23 566 588 565 588 0.94 14 18 0.00028 0.018 15.2 0.0 1 23 594 616 594 616 0.97 15 18 0.00038 0.024 14.8 1.4 1 23 622 644 622 644 0.97 16 18 0.00035 0.022 14.9 5.4 1 23 650 672 650 672 0.97 17 18 3.2e-06 0.0002 21.4 0.7 1 23 678 700 678 700 0.98 18 18 4e-05 0.0025 17.9 3.2 1 23 706 728 706 729 0.95
Sequence Information
- Coding Sequence
- ATGAGAACACCCTCATCTCAGAATGGCATGGAAAGTAACATAACACCAATGAAAGCAGTAAAGAAACAATACACCTGTAACAATTGTAAACGTGTTTTTAAgagagaatttaatttaatacgtCACACAAGTAATTGTTCTATATATAAACATTCCAATAAGAAGATATCAATGGAAACAAATAGTATTAAATTGAGATGCAAAAATGTCTTTGATGAAGAAACTCATGAAAAagtcaataaaataaaatccaatGTAAGTGCAGCTGAAGCAAAAAAACATTGCAATAAATATGACAAATCAAGGAAAAAATCAGATTCCTATGCTTGTATGTATTGTGAATATacaacagaaaagaagaaatcattCGAATTGCATGTCATAAAATCACATCCAGAATTTTtgcaaaagaaggaaaagaaaattcgatgtAAAGATGAAGAAGCAGTAACACATGCCAGAATTGAAGTAGATGGAAAAGTTTACTATCATTGCAATGAATGTGGAAAGAATCTTTATTCTCCATATACATTCTCTTGGCATATACGAATACATACCGGTGAACGACCGTTTACGTGTCACCTCTGTGGAAAGCAATTTCGCGTTAATCAAGGTCTTACAAGACATTTGCGTGAAACTCATGCAGGCATCAAGAACTTTTCATGTGATATGTGTGGGCGCAGGTTTTCAACCAAACGTAACGTAGATGATCATAAACGTATTCACACTGGTGAACGTCCATATGCTTGTAATATTTGTGGAAAAACATTTAAACAGAAGTCATCATTATTTGTTCATAAGCGTACtcattcgaatatttttccgtTTACATGCTGTTATTGTAATCAGAACTTTAGAACTAGACCACAACTTATGGTTCACATTACTAAACATACAGGTGAAAGACCACATGCATGTGACATATGTGGCAGATGTTTCCGCATAAAGCATGAATTAAAAAGGCATAAATTAGTTCATTTTGATGAAAAACCATGGCAATGCAAAGAGTGCAATCTTGCTTTTCGCCAAAAACGTTATTTAGTTAATCATAAAAAACTCAATCACAGTGGAGATGCATTGCAAGCATCCGAGGATAACAGTATTATTCACATTTCTACAATCCAACTTGAGAATTCGAAAATAGAAGGATTGCAATATCTTCAATGTGCTCAATGCGAGATAGTATTTACAGATATTAAATGTCTTATAAATCATATGAATGTGGAACACAGTGCAGAAATGCATTATTGTTCTCATTGCAAAGTAGCATATAATGGGTCAAAAAAGGATTTTGAAGAACACTTGACTGCTCATTATAATACCACATATGCTATTTCAAAAGATGTACTACTGGAAGATCAAGTTGTATTGATGCAAGACTCTAAAACTAAATCTGATAATGATGAAacacaaaaagaagaaattaatatagaGGCTTCTTGTGATGAAAAATCATTGTTTACTTGTCATTTATGCCATAAAAGTTATAAGAAGAAATGTGAACTAAAAAAGCACGTGATCTCACATGATGATGTGATCCAAGCACAAAATCAGGATGAAGCAGAGTTAATACACAAAGCAAAACAAATCATTAACGACCGTGTGTCATATAAATGTGAATTGTGTAAAAAAGTTATGTTTACAAAACGTGGTTTCTTGCGTCATATGAGGGTACATTCGGGGAAACGTCCGTGCAGATGTGAGTTGTGTGGAAAATGCTATCGTATTGAACAAGATCTGGCACGTCATATAAGGGATGTTCACGAAGGTTTGAAAAAATATGCATGCGATATATGTGGTCGTGCATTTGCAAATAAAGGTGCAAAAGATGATCACAGAAGAATACATACAGGAGAACGACCATATGCTTGTGAACATTGTCCTAAAACATTTCGTACATTAAATTCGATATATATTCATAATCGTGTACATACTAATTATAAGCCTCACAAATGTTCATATTGTGGCAAATATTTTAGAAGTAGACAGCGATTAAATAATCATGAAACAACTCATACAGGTGTAAAAGCATTTTCATGTGAAATCTGTGGCAAATCATTCTCGGTTAAAGGGGAAGTTATGAGACATCATGCAACTCATAATCAAGAAAAACCATTTGATTGTAAGGGTTGTGGTATGAAATTTGGGCAGAAAAGATATTTGCGAAATCATATAAAGCAACATCATAAAGAAGAGTCTAGTATATTATTAGCTGAATTAACAGAAAAACATAattag
- Protein Sequence
- MRTPSSQNGMESNITPMKAVKKQYTCNNCKRVFKREFNLIRHTSNCSIYKHSNKKISMETNSIKLRCKNVFDEETHEKVNKIKSNVSAAEAKKHCNKYDKSRKKSDSYACMYCEYTTEKKKSFELHVIKSHPEFLQKKEKKIRCKDEEAVTHARIEVDGKVYYHCNECGKNLYSPYTFSWHIRIHTGERPFTCHLCGKQFRVNQGLTRHLRETHAGIKNFSCDMCGRRFSTKRNVDDHKRIHTGERPYACNICGKTFKQKSSLFVHKRTHSNIFPFTCCYCNQNFRTRPQLMVHITKHTGERPHACDICGRCFRIKHELKRHKLVHFDEKPWQCKECNLAFRQKRYLVNHKKLNHSGDALQASEDNSIIHISTIQLENSKIEGLQYLQCAQCEIVFTDIKCLINHMNVEHSAEMHYCSHCKVAYNGSKKDFEEHLTAHYNTTYAISKDVLLEDQVVLMQDSKTKSDNDETQKEEINIEASCDEKSLFTCHLCHKSYKKKCELKKHVISHDDVIQAQNQDEAELIHKAKQIINDRVSYKCELCKKVMFTKRGFLRHMRVHSGKRPCRCELCGKCYRIEQDLARHIRDVHEGLKKYACDICGRAFANKGAKDDHRRIHTGERPYACEHCPKTFRTLNSIYIHNRVHTNYKPHKCSYCGKYFRSRQRLNNHETTHTGVKAFSCEICGKSFSVKGEVMRHHATHNQEKPFDCKGCGMKFGQKRYLRNHIKQHHKEESSILLAELTEKHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -