Oorn096620.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- -
- Assembly
- GCA_963969285.1
- Location
- OZ017740.1:284617198-284619693[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.086 36 8.2 0.7 3 23 291 313 289 313 0.91 2 12 5.1 2.2e+03 2.6 0.8 1 22 427 448 427 451 0.89 3 12 2.5 1.1e+03 3.6 5.1 1 21 461 481 461 485 0.91 4 12 0.0052 2.2 12.0 0.1 2 19 507 524 506 527 0.93 5 12 9.7e-05 0.041 17.5 1.5 1 23 544 567 544 567 0.97 6 12 0.095 40 8.0 0.2 1 22 572 593 572 596 0.88 7 12 0.17 73 7.2 0.2 2 23 612 634 611 634 0.97 8 12 0.057 24 8.7 0.1 1 19 639 657 639 660 0.84 9 12 4.7 2e+03 2.7 0.3 2 23 701 722 700 722 0.91 10 12 0.00085 0.36 14.5 2.0 2 23 734 754 733 754 0.96 11 12 0.00044 0.19 15.4 0.7 1 23 760 783 760 783 0.96 12 12 5.8 2.5e+03 2.4 1.5 1 13 801 813 801 813 0.91
Sequence Information
- Coding Sequence
- ATGCTTGGTGACGATTTAGACGACACTCATCTCTGCATAAAATGCAGTCGCACGATTGTTGGCTTGGACAATTATATTCAACATCGAAAATCCAATTGCTCCCCTAAATCTACCGAACAAATATCGCAAATACCAAGAGATCCAGATCATAGCGAACACCAGTATCGAAATTTTGACTTCCCCGAAACACCCAACTACCATAAATCGGAAGAAACGGACAAACCAACGAAATCCTTAACAGACTCATATGACATTCCTTATGACCTTGGAGCTGATGTATTTTTCTCATCCCTGGAACTGCAGAGCAGCTCGCGAAAACCAATAAGTAACCCAGCTGCTGCATCAACCAGTGGAAAACATGCCTCATCCAGCAAAGTCCTCACTAGAAAAGCATCTGCTGCTCTTTTGTCACATCATGAGCACAATGACGCATGGATAAGTCCTAGCAACAACACTGATAATTTGATGAAAGCCGTCAGGGATATAAGTGGAACGAAAAAGTGTGACAGTATGTTTATGGTTCCATTCCATCACGACTCACCTGAACCTAgtgacgacgatgatgatgatgatgaggacTACGGGACAAGCCCTCCATCTTCCCATACTGGTGGTAAGTGGAAGCCTGGCAATACAATTTCCCCAACAATCCTGCGAGCTTCCCCAGGATGGGATGATCGGTCGCAGTGGGATGGCAatgaacatgattttgaaaagCCTACAAAATCTCAAGATCATGATGAATTCGATCACGACTTCATACCTCCGCCGGGACATACAAAAGGAAAATGGGTTCCAGGGACGAAAATTGTTAAACTGGACTACAAAGAAGAAGTTGAGGTTGAGAAAATTTTCTCTGACCAATACTGGTGTAACACGTGTAACCGTAAACTTGCAACAAAACTACTGTACGAGCGTCACATAAAATCCAGCTTGCACCTCAAAAGATCAGAACCTGAACAAGAGCTAGAGCAAGCAAGACCGACAGTTCCAAAAATATCAGAGAGAATAAAGAAGCGATCAATATACCTCAATGACGATATGTATCTGACTGAGGATCCTATAACGGACGAAGTCAAACCACCCGAGTCAGGCAAGAAAGTACGCAAACGTATTAAATTCTTCACAAAATGCGAAACGTGCAAGGTACGACTCCGTAAAACTGTCCTAGGCAAACACTTGATATCCCACTACCACTACAGACGCATGTCGCGCAACCCAGCGAAGTCCTCCGATATGGTACTGAAAAATATTGGACAAATTGTCCATCAAGCGCCGTATCAATGCCAACCTTGCAAATTTTACACCAATACCCAAGAAGACTTCATTAACCACTGGAGTTCGAGTGATCATGCTGACATTGTCGAAGGTCCTGGGCGTTTTTGTTGCAATTTTTGTAAGTTTGAATGTGAAGATAACAATCAAATGCGACGTCACTTACTTGGGCAAGATCATAAGGAGGTGATACTGGCCATCAATGGTTCGGTACCAATTATCATTGGAAAAAGGATTGTTATTGAATGCCCAAAATGCAAATTGGAATTTCGATACAACATTGAACTTAGAAAGCATGCAGAACTATGCACTCGTGAACCAGCAGGAACCGCCTCCAACGACTATCAATCAAAATTCGTTTGCGAAGTCTGCAAATTATCCTACACGTCTCAGCTTTCCCTGCAGAAGCACCAAAGGCAAAAGCATAAGACCTGCAGTTACTTGTGTTCAATTTGTAAAATTGAATTCTCCTCCGCGCTAGAAGCTAAACGCCATCGATCTTCAGCCCTTCATCGCGTGAACTCAGCAtctttgaaaaagacaaaagatttaaataaaaaatgcCCTACATGCGGAGATATCCTTCGAGATATTCTAGAACTCAAGGAACATATTAAAACGAAGCATCCTGGGGTCATGTTTGCATGTCCTCATTGTGGTGAAAAATTTGCTTTGGCTCAGGAAGTGAGCAGTCATAATCGCGATAAAATCTGTCAAGCTTCTTCTTCAAAGGATGTTCTAGCAAATAAGTCCGAAAAACTATCGTCGAATGATATGACGATGGTCAAAGATGAAATAACCGGGAAAAATAGTGGAAAGTTGTGGAATTGCACGCAATGCAACTTTAGCTCCCAAATGAAAGCAGAGCTTTTATATCATGAAATTTTACATGAATACAAGGATGCGAATGTCAATGCACCTTTGCCTTGCTCTATATGTCAAAGAAAGTTTAGGAAGTATTCTCTTCGATACCATTTGCGACAGCATACTAACGAACGCGTTTTTGAATGCGGTCAGTGCTCGATGAAATTTTCTAGGAAGAACAATTTGGATACACATGTCGAACGAGttcatatggaaataaaaaagGAACTTAAGCCGGATCAAAGTGGAAACAAAGACGCTTTCAAGTGTGAAAGGTGTAGCAAACTGTTCAACACAAAGTGA
- Protein Sequence
- MLGDDLDDTHLCIKCSRTIVGLDNYIQHRKSNCSPKSTEQISQIPRDPDHSEHQYRNFDFPETPNYHKSEETDKPTKSLTDSYDIPYDLGADVFFSSLELQSSSRKPISNPAAASTSGKHASSSKVLTRKASAALLSHHEHNDAWISPSNNTDNLMKAVRDISGTKKCDSMFMVPFHHDSPEPSDDDDDDDEDYGTSPPSSHTGGKWKPGNTISPTILRASPGWDDRSQWDGNEHDFEKPTKSQDHDEFDHDFIPPPGHTKGKWVPGTKIVKLDYKEEVEVEKIFSDQYWCNTCNRKLATKLLYERHIKSSLHLKRSEPEQELEQARPTVPKISERIKKRSIYLNDDMYLTEDPITDEVKPPESGKKVRKRIKFFTKCETCKVRLRKTVLGKHLISHYHYRRMSRNPAKSSDMVLKNIGQIVHQAPYQCQPCKFYTNTQEDFINHWSSSDHADIVEGPGRFCCNFCKFECEDNNQMRRHLLGQDHKEVILAINGSVPIIIGKRIVIECPKCKLEFRYNIELRKHAELCTREPAGTASNDYQSKFVCEVCKLSYTSQLSLQKHQRQKHKTCSYLCSICKIEFSSALEAKRHRSSALHRVNSASLKKTKDLNKKCPTCGDILRDILELKEHIKTKHPGVMFACPHCGEKFALAQEVSSHNRDKICQASSSKDVLANKSEKLSSNDMTMVKDEITGKNSGKLWNCTQCNFSSQMKAELLYHEILHEYKDANVNAPLPCSICQRKFRKYSLRYHLRQHTNERVFECGQCSMKFSRKNNLDTHVERVHMEIKKELKPDQSGNKDAFKCERCSKLFNTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -