Oorn007907.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- -
- Assembly
- GCA_963969285.1
- Location
- OZ017738.1:95833652-95849328[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.082 35 8.2 1.3 3 23 421 442 419 442 0.94 2 11 0.005 2.1 12.0 0.4 3 23 451 472 450 472 0.95 3 11 4.2e-05 0.018 18.6 0.5 1 23 479 502 479 502 0.98 4 11 0.012 5.2 10.8 1.2 1 23 507 529 507 530 0.95 5 11 0.029 12 9.6 2.5 1 23 535 557 535 557 0.93 6 11 0.0082 3.4 11.4 0.8 3 23 565 585 563 585 0.94 7 11 0.00012 0.05 17.2 1.3 1 23 591 613 591 613 0.98 8 11 0.026 11 9.8 0.1 2 23 622 644 621 644 0.95 9 11 0.0002 0.084 16.5 1.0 2 23 661 683 660 683 0.95 10 11 5.7e-05 0.024 18.2 1.9 1 23 689 712 689 712 0.98 11 11 0.00031 0.13 15.8 2.1 1 23 718 740 718 740 0.98
Sequence Information
- Coding Sequence
- ATGCATCTGCAAGGTGTAGAAAACTACTTTGTTTTTCAGCCTATTCAGCTGGCAACAGAAAGTGTGGAAGAAGTAGACTCTCAAGAGTTGATTGTTCCAGAACCGGGTCGCCTCACAAGTCCAGAAACAAAAGCGTCTGCATCCTTAGAAACACAAGATTTAACAGTTGAAGTGAATGCTTCGCCTGCAGAATCGTTTGCTGAGCCATCCACCCCTATTTGCTGCATCCCATCTTGTCCTTCAAATAAGCAAAACACGGGTGTAGTTAGGCTATTCACTGTTCCTGATGATACAAAGCGTAGATCATTCTGGACTAATATATTATCAGATGACAATGTAAAGTTTGTGAAAGGCTCCCGAATTTGCCACCGACACTTCGAAGATAGATACATCGTGAAGGGTGGATCGTATATTGGTCAAGATGGTGTTGAAAGAGAGTACGAAAATGTGAACTGGAGGTTAACTGAAGATGCAGTACCATCAACTATACTCATTGAACATTCAGTAAAGGAAAAGACTATTATGTCCCGCCTACctgaaaaaaagtttaaagtaGAAAAGACCTGTCGAACATGTTCAATAGAAATCGAGGATGAAAAGGATGCTACTCCGTTGTTTACGGGAACATTGTCTTTACAAAAATTTCGACCAGATATATTTAAGGAATTGGAAGACTTTGGCTTAAAAATAGAGGAAAATGACGGTTTACCACAGCAAATTTGCCAAAAATGCCTACAGAGCTTTTCAATATTAATTCAATTTCGCAAGCAATGTCAACGTGTACAAATAGatttagttaaatattttaaGGATACGAAACAACCGCAACGCATGCGATCTAGTGATTCTGGTGTAATAACATTATGCGATAACTACAGTGATGATGAAGGCGTTTCTATGATTAACAGAAattctgttaatttaaaaaatgaaGATAGCTGTGTCAATGACGACGAcattgatgatgatgatataatGTTGGATGATGACATCTTATCTGATAACGAACAAAACGTGTCGGATGACGAAAATTCCTCTGCCAACTGGACCTGTGAATACTACATTGGAGCCGATGAAAAAACTGGCCAACAGAGAAAAAATAGATTGAAAAGAAAGGCAGATACAGCAGAACATGATCAACCTAATAAAAATGAAAAGgaGGAAAACGAACCTGAATTGTTTCAGGATGAGGATGGTAGTGATAGCTTAAAAGTCGACATCAAAATAAATTCCCACGACGAAATAACTACAATTATCATATGCGAAGTATGTAGGGAAGAGTGCCATGGTAAGGAAGCGCTGGAGCGTCACATGAAAGATTTTCACCCTGATGGCGACTTAACCCCAATATGTCGAGTATGCGGTCGTCAGTTTCGCTCCATCAAATCGCTTGATGCACATTTATCTCGTTCTCATCGACTAACCGAACAGGATTATAAATGTAATGATTGTGATCGTTTATATCCTTCGAAAATTTCCTTGAAAGAACACATTAAACGCATACATGAGAAGGGTTCATTTGAATGCGATATTTGCGGGTATAAATTGAATAATGTACGAGAATTTCGCATTCATAAAAACGGTCATCatcaaaagaaaaatttcaagtgccaatattgtgaaaaaaaattcattagtaATAGAAAGAAGAGTGAACACGAATCGATACATACAGGGGAAAAACCACATTTATGCGAACTTTGTGGTCGTTCGTTTCCTTTCAAACAAGGCTTCCTTGAACACGTAAAAGGTCATACTGGGTCAACAGAGTTTAAGTGTGACTTGTGTGAAAAAGGTTTTGCAACGAAGCGTAAGTTATATAATCATCGACTCGTGCACATAAATGGACATTATAAACCATTAAAATGTAAATTATGCGATCAAAAATATGAGCGAGAAAATTTAATTGCGTCACACATGGAAGTCGTGCACGGAAtactggatggaagtgaaaatgtGGAGGATTTACAGCCAAAAATGGAATGTGAAATATGCAAGAGAAAATTTTCAAGTGAAGATAAGGTTAACAAACATATGCAACTCAGACATAATCCCGATCATCTATACGAGTGTGAATTTTGCGGGTGCCGATACAGACGAAAAGACAATCTTGGAGTCCATATTCAAAGAATGCACAAGCCGATTAAAAAATATGAATGTGAAATATGTCATAAAAAATTCTTCAATCTTAATGAGTTAGATCAACATTTAAGCTCGCATTCAAGTAAGAAAACTACTATATGA
- Protein Sequence
- MHLQGVENYFVFQPIQLATESVEEVDSQELIVPEPGRLTSPETKASASLETQDLTVEVNASPAESFAEPSTPICCIPSCPSNKQNTGVVRLFTVPDDTKRRSFWTNILSDDNVKFVKGSRICHRHFEDRYIVKGGSYIGQDGVEREYENVNWRLTEDAVPSTILIEHSVKEKTIMSRLPEKKFKVEKTCRTCSIEIEDEKDATPLFTGTLSLQKFRPDIFKELEDFGLKIEENDGLPQQICQKCLQSFSILIQFRKQCQRVQIDLVKYFKDTKQPQRMRSSDSGVITLCDNYSDDEGVSMINRNSVNLKNEDSCVNDDDIDDDDIMLDDDILSDNEQNVSDDENSSANWTCEYYIGADEKTGQQRKNRLKRKADTAEHDQPNKNEKEENEPELFQDEDGSDSLKVDIKINSHDEITTIIICEVCREECHGKEALERHMKDFHPDGDLTPICRVCGRQFRSIKSLDAHLSRSHRLTEQDYKCNDCDRLYPSKISLKEHIKRIHEKGSFECDICGYKLNNVREFRIHKNGHHQKKNFKCQYCEKKFISNRKKSEHESIHTGEKPHLCELCGRSFPFKQGFLEHVKGHTGSTEFKCDLCEKGFATKRKLYNHRLVHINGHYKPLKCKLCDQKYERENLIASHMEVVHGILDGSENVEDLQPKMECEICKRKFSSEDKVNKHMQLRHNPDHLYECEFCGCRYRRKDNLGVHIQRMHKPIKKYECEICHKKFFNLNELDQHLSSHSSKKTTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -