Basic Information

Insect: Odontomyia ornata
Gene Symbol: -
Assembly: GCA_963969285.1
Location: OZ017739.1:23581969-23582907[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00038 0.16 15.6 3.1 1 23 15 37 15 37 0.96

2 10 9e-05 0.038 17.5 0.8 1 23 44 66 44 66 0.98

3 10 0.084 36 8.2 2.1 1 23 70 92 70 92 0.97

4 10 0.24 1e+02 6.8 0.8 3 20 109 126 107 130 0.81

5 10 0.00025 0.11 16.2 4.4 1 23 137 159 137 159 0.98

6 10 3.9e-07 0.00016 25.0 2.4 1 23 164 186 164 186 0.99

7 10 3.5e-05 0.015 18.8 1.4 1 23 192 214 192 214 0.98

8 10 1.1e-06 0.00046 23.6 4.7 1 23 220 242 220 242 0.98

9 10 1.6e-05 0.0066 19.9 1.3 1 23 248 271 248 271 0.96

10 10 0.61 2.6e+02 5.5 0.0 2 19 273 290 273 291 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00038	0.16	15.6	3.1	1	23	15	37	15	37	0.96
2	10	9e-05	0.038	17.5	0.8	1	23	44	66	44	66	0.98
3	10	0.084	36	8.2	2.1	1	23	70	92	70	92	0.97
4	10	0.24	1e+02	6.8	0.8	3	20	109	126	107	130	0.81
5	10	0.00025	0.11	16.2	4.4	1	23	137	159	137	159	0.98
6	10	3.9e-07	0.00016	25.0	2.4	1	23	164	186	164	186	0.99
7	10	3.5e-05	0.015	18.8	1.4	1	23	192	214	192	214	0.98
8	10	1.1e-06	0.00046	23.6	4.7	1	23	220	242	220	242	0.98
9	10	1.6e-05	0.0066	19.9	1.3	1	23	248	271	248	271	0.96
10	10	0.61	2.6e+02	5.5	0.0	2	19	273	290	273	291	0.94

Sequence Information

Coding Sequence: atgttttTAACACAAACGGAAATGCTGGTTCATCGCGCACAGCATGATTGCAATATTTGTTTCAAGACGTTTAAAAACTATGCTACGATGATTTCACACAGAAAAATACATGATTCAAACTCGACAAACTATAACTGTCCAATTTGTGAATTCGActcctaccgaaagtacaaccttCAGCTCCACATAAAAAGTCATGTTAACGATTTCCCATGCAAAATTTGTTGCAACAGTTTTAACAGCGAGCAACTATTGGAGAATCATAAGGCAAAACATGAAAAGGGTGAGTTGGCCCAATACTGGGAATCAAGCAAGAAAGTGATATGTAAAGAATGTGATATGAACTTTGATTCGAAATTCAAACTATATTTTCATACTCTTGAAAAGCATAGCAGCGAAAATGAAAGATTTACATGCTCAAAATGTAGTCGCGTTTTTGAAACACATACAATGCTGAAAAACCATGAAAAGTCTCATAGTGATCGTTGTTATAAGTGCAAAGAATGCGGCAAAATATTTTCGAAGCTTAAAAACTATAACGAACATCAGAACACTCATCTAGATAGCCGTCCTTTTCAATGCGATATTTGCTTGCAACGCTTTAATTACAGTAGCAACTTATCACAGCATAGGAGCATTCACAAAGGAGCTAAGAATTTCGTATGCCATTACTGCGATAAAAAGTTTACAAGATCCAACACTTTAAACTTGCATTTAAAATCACATCGGAATGAACGGAATTATTCTTGCGAATATTGTGATAGTTCATTTGTTCAGTCAAGTACATTGTATAAACACAAACGAGCTTTACATAGGAAATGTGAACAGTGTGGTCAAATAGTCGGAGATCGGAAACAATGGCAAATACACGCATGGAATGGATGTGGTGGTACTTGGAATACGGGTACAACTGATATAGAACCCGACATTGATGAGTAA
Protein Sequence: MFLTQTEMLVHRAQHDCNICFKTFKNYATMISHRKIHDSNSTNYNCPICEFDSYRKYNLQLHIKSHVNDFPCKICCNSFNSEQLLENHKAKHEKGELAQYWESSKKVICKECDMNFDSKFKLYFHTLEKHSSENERFTCSKCSRVFETHTMLKNHEKSHSDRCYKCKECGKIFSKLKNYNEHQNTHLDSRPFQCDICLQRFNYSSNLSQHRSIHKGAKNFVCHYCDKKFTRSNTLNLHLKSHRNERNYSCEYCDSSFVQSSTLYKHKRALHRKCEQCGQIVGDRKQWQIHAWNGCGGTWNTGTTDIEPDIDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -