Oorn049672.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- -
- Assembly
- GCA_963969285.1
- Location
- OZ017739.1:129962386-129974207[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.037 16 9.3 1.0 1 23 822 845 822 845 0.93 2 13 0.91 3.9e+02 4.9 2.5 1 23 961 983 961 983 0.93 3 13 0.00011 0.045 17.3 1.9 2 23 986 1007 986 1007 0.97 4 13 3.3e-05 0.014 18.9 0.2 1 23 1013 1035 1013 1035 0.98 5 13 6e-05 0.025 18.1 5.1 2 23 1042 1064 1041 1064 0.95 6 13 5.2 2.2e+03 2.6 0.1 5 23 1077 1095 1075 1095 0.96 7 13 0.0025 1.1 13.0 2.9 2 23 1101 1123 1100 1123 0.96 8 13 0.06 25 8.7 0.4 2 23 1134 1154 1133 1154 0.96 9 13 7.9e-06 0.0033 20.9 0.5 1 19 1160 1178 1160 1182 0.96 10 13 0.00082 0.34 14.5 1.4 1 23 1190 1212 1190 1212 0.99 11 13 0.00046 0.19 15.3 5.9 1 23 1218 1240 1218 1240 0.98 12 13 8.7e-06 0.0037 20.7 3.9 1 23 1246 1268 1246 1268 0.99 13 13 0.014 5.7 10.7 5.6 1 23 1274 1296 1274 1297 0.93
Sequence Information
- Coding Sequence
- ATGGTGGTAGAACCCGGCCACAGAGGACTGAATTTTATTATTCAGCAAATCTTCGCACTGGCTCCTCCAAATCCCACCAATACGACTCCACAAAGACTTCCGCCTCCTCCCGCCTATGGAACAGCAATTAATCACCTCCGATCTCAGCAGAACCAAAATCAACTTGGTTTTCACACGCAGctttcatcatcgtcatcatcatcatcgccaTCCCCAGTGCATCGAAATTCGCCACATTCACGATCGCCCTTTAATCAAACGACACCAGTATCCACGGGAATGCTCCTCGCCTCTCCACAAGCATCGCCGCGCCCCCAATCATCACCCTCTGTCCTACGCTATGCTGAAAGTCCGGTCTCTGCTCAGTATGTAGAATGTGAAAATGGCGATTTCATCGTTCAAGAGTCTCCCCGACATGTTGTCGAGTGTATGGAAACTGAGAACGGAGAATTTTCAGTTATTGAAAAAGTGATACAGTCGCCACCAAGTGTTGTTCAGTTCAGTCCGGATGAATGTGATATAGGTAATGATAATGATAGTAAAGAATACGTTGCAAATGATCAATACTACGAAGTACATGAGGAAGAGCCTCCAGCCACTCCCTCGCCAAATATGGATGAAGAAATTACCGAGGAACAATATTTCGACGAAATATCCGCTACATCATCCAAGGGAACTGGTGTAAAAGATGTAACGATTTTAAGTAATGTAAAGTTAGATCCTAACGAATCCCTAGAGATAATGGAAAATTTAGGAAGCATGCAGTCGAAAGGACAGAGTGAATTGATTTGGACTGACATTGCTGACATTCAAAAGGAAGTTGAAAGCCGAATAGAGATTACAGGGAAAAGCGAAGGTGATGCCATAAATTGTGAATCGCCGCAAATTCTTCCTAAAGCATCCACATCAACTGCTACTAGTGTAATAAGACTGGCAAGTAATAAAAAAACTGCAAACAGCACTACTTTTGAAGACATTCAAGTAAAAGAAATGTCCCCTTGCAAAGATGTAAAAAACACGCAAAATTTACAACAGCCAAAGCGACCATTCAAGAAGCAACCAAAAAAACTAATGGTTAAATTCAAAGTAGCAATACCAGGTGTAGAAGTAAGTCCCAGCGAAAAAGACGTTGCTTCAGGCGAAATGGAGATAAGTTCAGGAGTTGTCCCTGAACAAGAAACTCAGGTTCAATCATCAAATCTAGTTGTAGAATTAGAAACCTCGAAATGTAGTGAATGTCAGGATGTTGGCGAGTGCCCAACTAGCGCACAAACTGTGAACGAAAGCACTCCTATGCCTGAGGAAAGTGAATTGCGTTCAACTTCACAGATCGACACTTCTGACAATGCAATAGATGTAGATAACTCTTTAATTATGATTCCGAAACAAGAGACTGATGCAACAACGGTTGAAATGAATTTGGAAGCGGCCCAACCAATGATTGTTCATGAGCCTTCCCTCAGCGGAGAACTACAGGCTGACTATCCCGATGTTTTCAATATGAACGAAGGCTTTGAACAAGATAATCCCAAGCGAATGACTTCCACGCAATCGGGAGAAACGTCGTTACAACTTgatgaaatgaatgaaatatcTAGACAAAGGATAGAATTTTCTCAGTTACTTGACGAAATGTGCAATGAACaatacaaaatattatcaacttCCAATAGCCCTACAAAAAGTATTCCACCTGATCATAACAACAAAATTGTAGAGGAAAATACTGGCACTGATTCAGTCAACTTCTTAATATCCACTAGCCAAAAGGATATGGAATCAAACAGTACAAAGTGTGAATTGGTAACATCGACGCTGCCTGAAAAATCTTTAGCGAATACCTCATTCAGTTTAGAATCTGCAGAAACAATTGCGTCCCCggaaaaaaatgaggaaaaagaaaaacaaaaagacgTTGAACAAACTACAGAGTTTAATAGCGATTACCCATTTGGGTTGCTCTATGATGGCACGAATTCTGCGGAAGGACAGCCTTGGAGTCGATATGTGACACCACAACAAATGTCTCAATTCCACGAAATGGATGAGCAGAGTAACTACATGGATTTAGATACATATAAAATAACAAGTTGTCAGGTATCGGGTATACCTAATATACATACGGATGAGAAAATGCCCGCTAAAGGTGAAATTTCAGAACAAGAGAGTAACGGTGATGTGGAAAACTCGTGGAGCAATCCGCACTACACTATGAATGGCTTTCGTATATCAAACACATATGAGGACTATAGATCCAACTGGATGGAAAATACTGATGGGGTCATACCTTTTTCACAAGATATTGTGACGGAGATTAAAGATGACCCAACGGAGCCCCCTGCAAACTCAATATTAGCTGGCATTAAAAATGAGGAACCATCAAGTGCACCAAGACCGCCAGCTGCTGTCACTTCGTCTGTGCCATCAAGAAAAATTGACAAAGCAGTCTCCTACTCAAGACAATTCCAATGCACCCACTGTTCACAGagttttccacttttaaaacaaCGTAATGCTCATTTAATCGAAGCTCATGGCTACAAACGTGTGAATCGACGTTTGATCCGTGAAGCTCCATCGTGCACTATAACAACCGAAAATTTGGCCGCATCTGTGGTTGCAAGTCAGCTTCCTACTCAACTTGATAACAATGTGACAATCACACCTAGTACAGTAACAGATGGTACGATTGATGATGTTAAGCTGGACATTAAGCCTGAAATCACAGTCACAAGCACTCCAATGGAAGTAACAATATTTCCTCGCACCAAATATGATTCAATGAGGGCTGAAGTATACCGAATGCTCATGCATTTCAATTTAAATATGCTTAAAGCGAAAAACATTGCAGTGGACGAGGCGTTCTTCGAGTCAAAATCTTTTTGCTGCTTCACTTGTAAGCGTAGCTTTATTAACGTTAAATTATACGATGAACATTTAGCTGAGCATCCTGCGGAATGTTTTACATGTGGCCGGAAATTTACCAGGTGGACATATTTATCCTTACATTTGAAACGCCACATCGGCTGGAAGGACTTTGCTTGTACAGTATGTGAAAAGAAATTTGTAATTAGAAGTGCACTCGTTGAGCACATGCGCACGCATACGGGTATATCTCCTTTAAAGTGCCCCATATGCGCTaaaaccttcaaacgatactCAAATCTAACTCACCACAAGAATGTTTGCCACAGCGCAAAGGCATCTAAGAAAAAAGATTATGTTTGCTATTGCGGCGAAGTACTTCCTTCGAAAGCTCGATTTTTGTGGCACAAAGAGACCCACGAAACAAAGCCGAAAGTTTGCCCTTACTGTCGGGATAGGTTCGTTCATCGACGAAGCTTGAAGCGGCATATACGCTTGACGCATTCAGATAAATTTGACTACGTGCAACCGGTAAAATGTAAAGAATGTGAACAGGTGTACGCAAAGGCTAGCATGAAAACGCACATGCTAACACATTCAATTGTTTCCCAGTACGAATGTTCGATTTGCAACAAATCCTTCTCGACGAAATGGAACTTGAAAATTCACAGTTGGGTGCATGCGAATCGAACAGCCAAACCCTACAAATGTGAACACTGCATTAAAGCCTTTGTTCGGGAAGTGGACTATAAAAACCACATAAATTCACATAAGAACATAAAGCCGTACACCTGCGAGTTTTGTGGATGTAAATTTATAAGAAAATACAATTATATGCGACATAGGAAAGAACACACTGCACAGAAGCGTTTTAAATGTGATCTGTGTGGGAAGACGTTCCATCGCAACTACTATTTAATTGAGCATCGCCGAATGCATACAGGAGAACGGCCGTTTCTATGCACAATATGTGGAAAAAGTTCAACGACAAAAACAAATCATAACAAACATTTAAAGATTCACCACTCGCGAGACCCGTTCACAGCGGAATCGTAG
- Protein Sequence
- MVVEPGHRGLNFIIQQIFALAPPNPTNTTPQRLPPPPAYGTAINHLRSQQNQNQLGFHTQLSSSSSSSSPSPVHRNSPHSRSPFNQTTPVSTGMLLASPQASPRPQSSPSVLRYAESPVSAQYVECENGDFIVQESPRHVVECMETENGEFSVIEKVIQSPPSVVQFSPDECDIGNDNDSKEYVANDQYYEVHEEEPPATPSPNMDEEITEEQYFDEISATSSKGTGVKDVTILSNVKLDPNESLEIMENLGSMQSKGQSELIWTDIADIQKEVESRIEITGKSEGDAINCESPQILPKASTSTATSVIRLASNKKTANSTTFEDIQVKEMSPCKDVKNTQNLQQPKRPFKKQPKKLMVKFKVAIPGVEVSPSEKDVASGEMEISSGVVPEQETQVQSSNLVVELETSKCSECQDVGECPTSAQTVNESTPMPEESELRSTSQIDTSDNAIDVDNSLIMIPKQETDATTVEMNLEAAQPMIVHEPSLSGELQADYPDVFNMNEGFEQDNPKRMTSTQSGETSLQLDEMNEISRQRIEFSQLLDEMCNEQYKILSTSNSPTKSIPPDHNNKIVEENTGTDSVNFLISTSQKDMESNSTKCELVTSTLPEKSLANTSFSLESAETIASPEKNEEKEKQKDVEQTTEFNSDYPFGLLYDGTNSAEGQPWSRYVTPQQMSQFHEMDEQSNYMDLDTYKITSCQVSGIPNIHTDEKMPAKGEISEQESNGDVENSWSNPHYTMNGFRISNTYEDYRSNWMENTDGVIPFSQDIVTEIKDDPTEPPANSILAGIKNEEPSSAPRPPAAVTSSVPSRKIDKAVSYSRQFQCTHCSQSFPLLKQRNAHLIEAHGYKRVNRRLIREAPSCTITTENLAASVVASQLPTQLDNNVTITPSTVTDGTIDDVKLDIKPEITVTSTPMEVTIFPRTKYDSMRAEVYRMLMHFNLNMLKAKNIAVDEAFFESKSFCCFTCKRSFINVKLYDEHLAEHPAECFTCGRKFTRWTYLSLHLKRHIGWKDFACTVCEKKFVIRSALVEHMRTHTGISPLKCPICAKTFKRYSNLTHHKNVCHSAKASKKKDYVCYCGEVLPSKARFLWHKETHETKPKVCPYCRDRFVHRRSLKRHIRLTHSDKFDYVQPVKCKECEQVYAKASMKTHMLTHSIVSQYECSICNKSFSTKWNLKIHSWVHANRTAKPYKCEHCIKAFVREVDYKNHINSHKNIKPYTCEFCGCKFIRKYNYMRHRKEHTAQKRFKCDLCGKTFHRNYYLIEHRRMHTGERPFLCTICGKSSTTKTNHNKHLKIHHSRDPFTAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -