Oorn007904.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- -
- Assembly
- GCA_963969285.1
- Location
- OZ017738.1:95796518-95798743[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.018 7.5 10.3 1.2 3 20 177 194 176 196 0.92 2 14 0.003 1.3 12.8 0.2 3 23 205 226 203 226 0.94 3 14 0.0045 1.9 12.2 0.3 3 23 234 255 233 255 0.96 4 14 0.0002 0.086 16.4 5.3 1 23 260 282 260 283 0.96 5 14 0.12 53 7.7 4.5 2 23 289 311 288 311 0.90 6 14 0.00013 0.055 17.0 0.9 1 23 317 339 317 339 0.99 7 14 3.2e-05 0.013 19.0 1.3 1 23 345 367 345 367 0.95 8 14 4.7e-05 0.02 18.4 1.0 3 23 375 395 373 395 0.97 9 14 0.003 1.3 12.7 0.4 1 23 400 423 400 423 0.91 10 14 4.5e-06 0.0019 21.7 0.5 1 23 438 460 438 460 0.99 11 14 4.9e-05 0.02 18.4 4.6 1 23 467 490 467 490 0.97 12 14 0.018 7.7 10.3 0.9 1 23 496 518 496 518 0.97 13 14 2.4e-06 0.001 22.5 1.5 1 23 524 546 524 546 0.98 14 14 0.7 3e+02 5.3 0.2 1 22 552 573 552 575 0.76
Sequence Information
- Coding Sequence
- ATGGGCTTATTTCCTCCACAGATTGGAGCAAATGATGGTCTTCCACAGCAAATATGTTCAAGATGTTTGgacaattttaattttattgttcaATTTCGGGAGCAATGCAAAGATGCACAAGAAGTGTTGGAAACAATTTATGAACGGCGTAATAGGAACAGTACTAATCTGAACTCTACAAGTGAGTTGGACGTTAAAAATGAGCCTGGAATTAAATTGGAGGAAGAAAGTTCAGGATCAAATAAAATTGAGGAAATAAATGTTGATGGTGAAAGCTACTTTGAAGAAGATCATTGGGAGTGCGAGTATTTAACTGATGCTAAGAACAATTCTACTGAAGACGGTCGGAGGGGACAATCCCCAGATGCTTTAATAAATAGTCAGAATGAGAATACTGATGACTGTGATTCAGACAACATCCCGCTAACAGaatttataaaagataaaaagacaaaaatatcaaggaaaagaacaaaaaaagaGAAACTGACCGATGAAGAGCAAACCGAACCAGCAGTAGAAGTAGCTTGCAAATACTGTGGTAAAATATGCAAATCATCTCGTGCATTTTTAATACATAAAGAAAAGTGTGATGCCTATAATGAAGTCAACTGTAGAATTTGCACAGTGGAATTCGAAAATAAAGATCAATTAGAAGCCCATAAAAAAGAGTTACACCCTAATGGTGGCGATCCAATGTGTCCAATATGCTCGCAAACCTTTGCAGACTCTGGCAAGAGAGACATACACATGCGACAAACGCACGGCGATGGACAATACAAATGCGTAATGTGTGATAAAGAATTCAAAAGCAAGATGTATTTGAAGTCTCACTTCAATCGGCATCATCACTCTGGAGACACTGAATGTAAAATCTGCCACGAAAAATTCTCAAATATGAATAAATTTCGGTATCACTGGACTCATGCGCATATTGAAAATATGAAGTACAAGTGCAATTATTGTGAAAAACCATTTGCCTCTCAATTTGTCATGCGTGTACACGAACGTTCGCATACTGGGGAACGACCATTTCTATGCAACGAATGTGGCACAGCCTTTCGGTACCGCACTCAATTTCTGGATCATATGAAATCACATGACAATCAACGTAATATCGCTTGCGACATGTGTGGACTTACTTTCTACACTAATCGCCAATTGTCTAATCATAAGCGAAAACATATGAGCAAGAATCATGCGTGCGAAATATGCGGCGAAGCATTTGCTTATAAACTAGATCTCTATACACATAGATACAACGAACATCGGGTGTCCAAATTCGTACCTAAACGCAAAATTGACTATCCATTCAAATGTCCAAAATGCACAAAAGGATTTTCGGTGCTAGCAAGTCTTTCGAAACATATTAAAATCCATACGGATAGTGAAAGAAAGCATGTATGCCCGCATTGTGGCAACGGGTATAAACGATCGGATCATCTGAAATTGCATATAAAACGCATGCATTTGAAAATCTTTGAACATAAGTGCGAAGTGTGTGGAAGGGAATACTTGGAAAAGTGTGCATTGAATGCTCATATGGTAGTACACAACAGTGCTAGACCATTCACTTGTACAATGTGCCCTGCTTCATTTAAACGCCAGCGTTCACTGAGAGACCATATGCTAAAGCATGAGGGTAAAAAGGAGTATGCATGCGGTATATGTGATATGCGATTTTTCAATCGAACTATCGTTGTCCTGCATACTCAACGTGTTCATTCAGATTCTCAAAAGCAATTCATGTCTGAACTTGTTCGCAAAGAACTGGAAGAGGCCACGTCAAAAGTGGGAGAAGAGCATGAATCTTTGCAAAACATGAAAGAAGAATTTATAAATGTTTGA
- Protein Sequence
- MGLFPPQIGANDGLPQQICSRCLDNFNFIVQFREQCKDAQEVLETIYERRNRNSTNLNSTSELDVKNEPGIKLEEESSGSNKIEEINVDGESYFEEDHWECEYLTDAKNNSTEDGRRGQSPDALINSQNENTDDCDSDNIPLTEFIKDKKTKISRKRTKKEKLTDEEQTEPAVEVACKYCGKICKSSRAFLIHKEKCDAYNEVNCRICTVEFENKDQLEAHKKELHPNGGDPMCPICSQTFADSGKRDIHMRQTHGDGQYKCVMCDKEFKSKMYLKSHFNRHHHSGDTECKICHEKFSNMNKFRYHWTHAHIENMKYKCNYCEKPFASQFVMRVHERSHTGERPFLCNECGTAFRYRTQFLDHMKSHDNQRNIACDMCGLTFYTNRQLSNHKRKHMSKNHACEICGEAFAYKLDLYTHRYNEHRVSKFVPKRKIDYPFKCPKCTKGFSVLASLSKHIKIHTDSERKHVCPHCGNGYKRSDHLKLHIKRMHLKIFEHKCEVCGREYLEKCALNAHMVVHNSARPFTCTMCPASFKRQRSLRDHMLKHEGKKEYACGICDMRFFNRTIVVLHTQRVHSDSQKQFMSELVRKELEEATSKVGEEHESLQNMKEEFINV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -