Oorn007912.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- -
- Assembly
- GCA_963969285.1
- Location
- OZ017738.1:95943637-95952363[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.2 9.3e+02 3.7 0.3 1 18 62 79 62 79 0.87 2 14 2.9e-05 0.012 19.1 2.1 1 23 225 247 225 247 0.98 3 14 0.00077 0.33 14.6 2.7 1 23 253 276 253 276 0.97 4 14 0.17 73 7.2 1.3 1 23 281 303 281 303 0.98 5 14 0.00024 0.1 16.2 6.2 1 23 309 331 309 331 0.99 6 14 4.1e-05 0.017 18.6 4.0 1 23 337 359 337 359 0.92 7 14 6.9e-06 0.0029 21.1 1.5 1 23 365 387 365 387 0.99 8 14 1.6e-07 6.6e-05 26.2 0.4 1 23 393 415 393 415 0.99 9 14 0.00016 0.067 16.8 3.2 1 23 421 444 421 444 0.94 10 14 0.00034 0.14 15.7 2.1 1 21 490 510 490 512 0.95 11 14 3.1e-05 0.013 19.0 1.9 1 23 518 541 518 541 0.94 12 14 4.9e-06 0.0021 21.5 0.8 1 23 547 569 547 569 0.97 13 14 0.0003 0.13 15.9 4.5 1 23 575 597 575 597 0.98 14 14 0.00078 0.33 14.6 0.4 1 23 603 625 603 625 0.98
Sequence Information
- Coding Sequence
- ATGCAGGATGAGACGCGGAAACCTTTTAGCAAAGCTTGTCGAACTTGCCTTGATACCGACTTCAATCAAGACGAACTTATTTCATTGTTTCACTCGGCAAGTGACATGATTGTACCCAATGAAGTATTGGACATAATTGATGCATTCCAACTTGGTATAAAAAAAGACGATGGTTTCCCTCAACATATATGTTCCAAGTGCCTTGAAGCATTTACATCAATAAGTCTATTCAAAAAACAATGTGCTGAAGTCCAAAATCAGTTAGGGGATATCTTCCCTCCAATAAGTGCTGTTGCTGATCCGAACCCGCAGTCAAATTTTGAACAGATAATTTCCTTTGAAGTCGTGCTCATGAACTCGGACGATGAGgtCCTCGAATCAGAGAATGAATTTAACAGTCAGATGAAAGAGGGTGTTGGCAAAGATTATGTGTTTAAGAGCAAAAATCCTGATAACCCTAATGATGAGGAAAGTGACACTACAATTTGCCGACTGATCAATAGGTCGACCCGTGATGGTGAAATTcaatTACTAACAAAACCTGAAAGCAACAAAGGCGATAAAATTATGAATGTAGCAAAAGTTGAATGCATAACAGACATTTCTTTAGACTCCCAATGCGGTGCAGCAATTACAAGCTATTCTACGCCTAAACCCATTACAACTCTACGCTATCCATGCCCGCTATGCAGTCGGAAATTCAATCATCCTTCAAATCGAAACAATCATCTTCAAACGCATAACGATAAGAACAGTTTCAGCTGTGATATATGTGGGCAGCACTTCAAAAGTAAACTTTATGTTTTGAGGCATAAGCGCTCAGTTCACGAAGTTACAGAATATGAATGTTCAATTTGTTACCAAACTATAAGAAATGTAAAACGCTACAATTATCACATGCTATCACATAATCCCGTTAAGAAGTACAAATGCTCATACTGTGATCGGTCCTTCATGCAACAACATCACATCCTAAATCACGAGCGAACCCACACCGGAGTAGCACCTTATCTTTGTAATGTGTGCGGAAAAAGTTTCAAACAAGAGACTAATCTTAAAAAACATTGTAGACTACACACTGGGGAACGGCCATACGAATGTAATATTTGCAGAAAAAGGTTCGTTCAACGTGGAACATTTGTGCTGCACATGAGACGCCATGACAATGTTCGTCCTTTTCAGTGCGATATTTGCGGTAAAAATTTCATTCAGAGGTCTTCTCTCTCAATTCATTTGCGTGTTCATACTGGCGATAGGCCCTTTAAATGTGATGAGTGCTCTAAGACGTTTATTCAGGCCCATCAGTTGAAATATCACAAGTATTCTGCTCATCAGCTCCCTATTGTTGATAAACAAGAACTGCAATTAAAATCGGCGTTACCAACAAATACCACAAGAAAAAAAGGAGAAGGCAGTGTAGACAAAGAGTGCCCTAATAATGCACGAAACGATACGATTTTTTATCCATACTCTTGTCCGATATGCTCTAGAGGATTTAAACTTCCATCTTCGTTGAAATCTCATTTAAAATGTCATTCTGAAGAGAGGAAGCATGTGTGTAAAGAATGTGGAAATACATTCAAACGTGCCGAACACTTGAGAATCCACACAAATGGAGTACATTTGAAAAAAAAGCCATATGCTTGTGATTATTGTGATAAAACATTCTCACAATCTGGCGATCGCAACATTCACATGAAACAACATATGGTTGATAAACCGCATAAGTGCCGATATTGTAACAAAGGATTCAGGCTACAAAAATCTCTGCGATCTCACGAACGTATTCATACGGGCGAAAAGCCATACATATGTGAAATATGCGAGATGTGTTTCATATCATATAATGCATTAGCAATACATACTATGAAGCATTCCTACGTAGAAAAGCGAATGGTGAATGATAAGACGTTATCAGAGTTTAAAAAGTCAATAGATGAGAATAGGAAGCCAATCCCAAATGAAAAACAAGAAGAGCTCTCGGCAAGGGCAGTCGACAAGAGTATTCTTGTAAGCCAGTATTCCTTAGAGAGTACCCGAGGAAGTGGAGGTTACTTTAAGAAATTGAGTGATTTAGGCGAAGATCAATTATCAACGTCACGGTATGTCGGTGTCATCGTAAGCAGTTTGCCACACAGCTACGCTAAGCTAATTGTTGCACTCGAAGCGCGACCAGAAACAGATGTTGCATTGTCATTGGTTCAGTCAAAGCTAATTACGGCAACGGCAGCGAAAATACCGATTCGGCATTGGAAACTACGGCgcaaaataaaagcaaaatcAAGTGTTTCTTTTGCAAACCATCTGGCCACTTAA
- Protein Sequence
- MQDETRKPFSKACRTCLDTDFNQDELISLFHSASDMIVPNEVLDIIDAFQLGIKKDDGFPQHICSKCLEAFTSISLFKKQCAEVQNQLGDIFPPISAVADPNPQSNFEQIISFEVVLMNSDDEVLESENEFNSQMKEGVGKDYVFKSKNPDNPNDEESDTTICRLINRSTRDGEIQLLTKPESNKGDKIMNVAKVECITDISLDSQCGAAITSYSTPKPITTLRYPCPLCSRKFNHPSNRNNHLQTHNDKNSFSCDICGQHFKSKLYVLRHKRSVHEVTEYECSICYQTIRNVKRYNYHMLSHNPVKKYKCSYCDRSFMQQHHILNHERTHTGVAPYLCNVCGKSFKQETNLKKHCRLHTGERPYECNICRKRFVQRGTFVLHMRRHDNVRPFQCDICGKNFIQRSSLSIHLRVHTGDRPFKCDECSKTFIQAHQLKYHKYSAHQLPIVDKQELQLKSALPTNTTRKKGEGSVDKECPNNARNDTIFYPYSCPICSRGFKLPSSLKSHLKCHSEERKHVCKECGNTFKRAEHLRIHTNGVHLKKKPYACDYCDKTFSQSGDRNIHMKQHMVDKPHKCRYCNKGFRLQKSLRSHERIHTGEKPYICEICEMCFISYNALAIHTMKHSYVEKRMVNDKTLSEFKKSIDENRKPIPNEKQEELSARAVDKSILVSQYSLESTRGSGGYFKKLSDLGEDQLSTSRYVGVIVSSLPHSYAKLIVALEARPETDVALSLVQSKLITATAAKIPIRHWKLRRKIKAKSSVSFANHLAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -