Oorn144491.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Odontomyia ornata
Gene Symbol
-
Assembly
GCA_963969285.1
Location
OZ017742.1:219592013-219594738[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.25 1.1e+02 6.7 1.3 1 23 57 80 57 80 0.94
2 19 0.085 36 8.2 4.1 1 23 180 203 180 203 0.98
3 19 0.0011 0.46 14.1 0.4 3 22 213 232 212 232 0.93
4 19 0.00068 0.29 14.8 2.7 1 23 239 261 239 261 0.98
5 19 8.2e-05 0.034 17.7 1.2 1 23 267 289 267 289 0.98
6 19 0.01 4.4 11.1 5.0 1 23 396 419 396 419 0.96
7 19 0.00015 0.062 16.9 0.1 5 23 431 449 428 449 0.94
8 19 2.1e-05 0.0088 19.5 0.3 1 23 455 477 455 477 0.98
9 19 2.6e-06 0.0011 22.4 5.0 1 23 483 506 483 506 0.98
10 19 0.00019 0.079 16.5 2.4 3 23 557 578 555 578 0.97
11 19 0.00017 0.071 16.7 1.0 1 23 614 637 614 637 0.96
12 19 0.013 5.4 10.8 0.4 2 23 652 673 651 673 0.94
13 19 0.00014 0.059 16.9 3.8 1 23 679 701 679 701 0.99
14 19 8e-06 0.0034 20.9 1.9 1 23 707 729 707 729 0.99
15 19 0.057 24 8.7 4.0 1 23 735 757 735 757 0.97
16 19 3.3 1.4e+03 3.2 7.2 1 23 763 785 763 785 0.93
17 19 0.0027 1.1 12.9 0.1 1 23 791 813 791 813 0.93
18 19 8.9e-06 0.0037 20.7 2.5 1 23 819 841 819 841 0.96
19 19 0.00014 0.057 17.0 0.3 1 23 847 869 847 869 0.98

Sequence Information

Coding Sequence
ATGGTTTCGCCGGAGGTTTCGTGTGAAGAATACTATATTAAGGAGGAACGGATAGATTACTTGGACGAGGTGAAGGAAGAGCTTGCGCTTGAATCAAGACGGATAGTCTTTGAGAATGAGACTATCAAGTGTGGGGAAGTGATGGTCGGATACGAAGGAGAATTTActtttatttgtgttttgtgtacgcaaaattttattaatttacattcATTTGGAAGTCACATAAAAGACTACCATTTTAACCATAATGCCTTAAGTACAATTCCAATGGAAAAAGATCAGAGAAGCAGTGATTCTCCTTGGGAAGAAAGAGGTACCATTTCCATTCCACCACAGTGTGAAACTAAACCGGACTCGCCGCCTCTGGTACCATTAACTGAACCAAACTCTACAAAAAAGCAACTTGAAATCACTTGTTTAGAAACTGTTGCTTCCTCGGATCGCAAAATAAATGAGGCTTCGAGAGACGAATTTTCCAGTTGCGAAGAAAGCAATCCTGTCACAGCATCCTCTGACTCTTGCAAAGTAGGGAAATACGTTTGCACATTTTGTGGATGCAGCTACCTAGCGAGGAGTTCCTACATGAGGCATATGAAAAGAAAGCACCCTGAACAGGTGGCAGAGCAGAAAATTTGTAAATACTGTGATAAAGAATTCGAAGATTTGGTACAATTAGAAACACACGTTTGCACACGTAAGGGACGAATGCGTTATGTTTGTCCATACTGTCCGAAAGTCTTTCATAACAGACAAAATCGTCACGATCATGTCAACATACATACAACTGAGCGCCCTTTCAAATGTTCTCAATGTCCAAAAATGTTTGCCGATCTGAAATATCTGGACAAACACAAACGTGCACATCTTGGAAGTCACACAACTGACTCAGATTTATGTCAAAATGCCTTATCTACAATTTCAACCGAACAAGATGGCAATAGTGACCCGTTAGGCACACAAGGCAGTAGTATTTCAATTTCTCCGCAGCGAGAAGACAACCCAGAATCACTACTTCTAGTACCAACAAGTGCTCCAAATCCTATTCAAAAGGATCTTGAAACCGCAATTCATGATACTGTTGATTTCTCGGACAATGGAAATGAGGCTTCGAAGAATGATGGTTCCAGCTGTAAAGAAAACACTCCTGTCACAATATTCTTGAACTCTACTAAAATAGAGGAATTCGCTTGCACATTTTGTGGGTGCAGCTACCACGCGAAGAGCTCCTTAAGTAGGCACATCAAGAAAATGCACCCTGAATATGCGCCCGTTCAGAAGATTTGCATATACTGCGATAAAGAATTCGACGATTCGGTACAATTAAAGGCACACGTTCGTACACATACAGGATTTAAGCGTTTTGTTTGCCCATTTTGCCCCAAAGTCTTTGACACCAGATCTAGTCGTCAGGAACATATTAACGTACATACAGGCGAACGTCCTTTCCAATGTGGGCTTTGTCCAAAAACGTTCAAGCAGAAGAGTAATCTTATGAACCACAAACGAAAGTGTCATAAAAAATTGAATCAGAGAGCAAGCAAACCTATTCAGAATGAACTTGAGGATTGCAATGACAATGCGTGTTCGAAGGATGATGCTTCCAGTTGCAAAGAAAGTACTCCTGTTGCAACATTCCTGAACTGTGCGAAAGTAGGAGAATACGGTTGCGGATATTGCGGGCACAGCTACAAAGCGAAGAGCTCCTACCGGAGACACATGAAGAAAGACCACCCTAACATAAAAGAAGAGGCCTGGGTTTGTATTGAAAATGACAGTTACATTGGGGAAGAAAATAGCCCTGGCGCATCATTCTCTGACTCTATAAAAGTAGGGGAATTTGTTTGCGAACTTTGCGGACGCAGTTACAATGCAAGCAATTCCTACAGACGACATATGAAGGAAAAGCACCCAGGAGGAAAAGAAGGTGCTGAACAGGCGCCAGAACAGCTTATTTGCAAATACTGTTATAAAAAGTTCAACGATGTGATACAATATACAACACACGTTCTTGCACATACGGAACGAAAGCGTTATGTGTGTCCGTTTTGCCCTAAAGTCTTTGCCACCAAACATTGTCGTCAATCCCATATTAACACACATACCGGCGAGCGTCCTTTCAAATGTTCTCTCTGTCCAAAAGCGTTTGCCCATGCAACTAATCTTGACAGACACAAACGTTCGCATCTTAAAATAAAGAATTATGTCTGCGATTGCTGTGGCAAATGTTTCGGTCAAAGCGTGGAAAAGAAACTTCACGAAAGAACGCACACAGGCGAGAAGCCATATCAATGCGAAGAATGTGGGCAACGTTTCATATGTCATTCTAGATTGATGGAGCATTGCAGGAAACACAAGAATATAAAACCTTTCGTTTGTAAGGTATGCGGTAGAGCTTTTATCTCTGCACGTCGCCTCAGGGGTCATAGTGTTATGCACAGGAATGAACGACCTCATCATTGCAATGTTTGCGGCAAAAGTTTTCCAAGACTCAAAGCATTGCGGGCGCATCAGCAATTACACTCCGAGGAGAAGAAGTACGTGTGCAATATATGTGGAGCAGCTTTTGCACAATGCGCTGGTTTATATTCACATCGAAAATCACACGGTGAAAGGATGTAA
Protein Sequence
MVSPEVSCEEYYIKEERIDYLDEVKEELALESRRIVFENETIKCGEVMVGYEGEFTFICVLCTQNFINLHSFGSHIKDYHFNHNALSTIPMEKDQRSSDSPWEERGTISIPPQCETKPDSPPLVPLTEPNSTKKQLEITCLETVASSDRKINEASRDEFSSCEESNPVTASSDSCKVGKYVCTFCGCSYLARSSYMRHMKRKHPEQVAEQKICKYCDKEFEDLVQLETHVCTRKGRMRYVCPYCPKVFHNRQNRHDHVNIHTTERPFKCSQCPKMFADLKYLDKHKRAHLGSHTTDSDLCQNALSTISTEQDGNSDPLGTQGSSISISPQREDNPESLLLVPTSAPNPIQKDLETAIHDTVDFSDNGNEASKNDGSSCKENTPVTIFLNSTKIEEFACTFCGCSYHAKSSLSRHIKKMHPEYAPVQKICIYCDKEFDDSVQLKAHVRTHTGFKRFVCPFCPKVFDTRSSRQEHINVHTGERPFQCGLCPKTFKQKSNLMNHKRKCHKKLNQRASKPIQNELEDCNDNACSKDDASSCKESTPVATFLNCAKVGEYGCGYCGHSYKAKSSYRRHMKKDHPNIKEEAWVCIENDSYIGEENSPGASFSDSIKVGEFVCELCGRSYNASNSYRRHMKEKHPGGKEGAEQAPEQLICKYCYKKFNDVIQYTTHVLAHTERKRYVCPFCPKVFATKHCRQSHINTHTGERPFKCSLCPKAFAHATNLDRHKRSHLKIKNYVCDCCGKCFGQSVEKKLHERTHTGEKPYQCEECGQRFICHSRLMEHCRKHKNIKPFVCKVCGRAFISARRLRGHSVMHRNERPHHCNVCGKSFPRLKALRAHQQLHSEEKKYVCNICGAAFAQCAGLYSHRKSHGERM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-