Oorn065527.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- -
- Assembly
- GCA_963969285.1
- Location
- OZ017739.1:358652455-358654628[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00016 0.067 16.8 0.5 1 23 151 173 151 173 0.95 2 19 0.11 44 7.9 2.0 2 23 179 200 178 200 0.95 3 19 0.022 9.3 10.0 2.0 1 23 207 229 207 229 0.93 4 19 0.045 19 9.1 0.1 2 23 234 255 233 255 0.95 5 19 0.0057 2.4 11.9 2.2 1 23 261 283 261 283 0.96 6 19 0.00084 0.35 14.5 0.7 2 23 289 311 288 311 0.92 7 19 7.6e-05 0.032 17.8 1.0 1 23 316 338 316 338 0.97 8 19 0.0005 0.21 15.2 0.5 2 23 345 366 344 366 0.95 9 19 7.2e-06 0.003 21.0 2.4 1 23 372 394 372 394 0.98 10 19 0.0018 0.75 13.5 0.6 1 23 402 424 402 424 0.96 11 19 4e-05 0.017 18.6 0.4 1 23 430 452 430 452 0.98 12 19 0.00014 0.059 16.9 0.6 2 23 459 480 458 480 0.96 13 19 4.6e-05 0.019 18.5 0.5 1 23 486 508 486 508 0.95 14 19 2.2e-05 0.0092 19.5 1.5 1 23 514 536 514 536 0.98 15 19 0.016 6.8 10.5 0.3 1 23 557 579 557 579 0.98 16 19 0.011 4.5 11.0 1.1 2 23 585 606 584 606 0.92 17 19 3e-06 0.0013 22.2 4.3 1 23 610 632 610 632 0.98 18 19 2.1e-06 0.0009 22.7 0.8 1 23 638 660 638 660 0.98 19 19 0.0005 0.21 15.2 3.9 1 23 666 688 666 688 0.98
Sequence Information
- Coding Sequence
- ATGAACCAAGTGTATAAATTCAGAACACAATATGAACTCAAATCACGAAAATTGAATAAACATTTGAGAAATATCGACTCCACATCAACAGAACATGCAACTGCAGAAATAAAAGACACCAACGTGAAGATACAGGACAATTTACCTGAAGATATAAAATTGGAACTCAAATCTAACTTCTTTGATTCTAAATTCACGACCTTTAAACAGGAATCTATTAAAGACAAATATGTGAAAGAAGAATATTTCTCTGAAAGTGATGAAATAGAAGTCAGtgattttaaatataatttgcaACAATATTCGGAACAACCTGAAATTCTAATGAAAATTGAAACAGAGAACGAAAACTTAAGCAGTGCCTCCCATACATCAACAAATAATCAGGGATTAGCATTAAATACACCAACTAACACAGAAGACTCTCATCAACTTACAGAATTCACATCTTTCCTATGCGAAATATGCAAAGCGAAATTTGAGACAGTTGACCAACTTAAAAACCATATGAAATTACATTCATGTCGTTATCTTCAATGCGATATTTGTTTCGAAGTATTTAACCATATTCTGACATTCATGAAACATAAAAAGGATCATGCAGCATTGCCACCAAACTATGAATGTAAGCTTTGTAAAAGAACTTTTCATGGTCAGAAGGCAATGAAAAATCACGAAGATGCCCACAGGAAGCAGTTAGTTTGTTCCATATGCGGTAATCAATACTCCCATCCACCGCGACTTTTGGAGCACTTAATCTGGCATGCTAGCCCAGATTCATTTAAATGTGAAATTTGTAATAGCACTTTCAAAGAAACTGCGAAATTGGTGAGACATCGCGCACATCACGAAGAAGGCCGTTTGAATTGCACAAAGTGTGATAAATCGTTTGATAAACCGTTTTTACTACGGTATCATGAAACAATGGCACATTCAAGTGAACAATACAACTGTAACCAATGTGACGCATCTTTCAATTCTGcacagaaattaaaaaaacacCTATATGTGCACGCCAATGTAAAAACACTAACATGTGAAGTGTGTAATCAAGTTTTCGACAATCTCAATCATTTGAATGATCATAGAATATGGCATTCCAATCCTGAAGCTTTCAAATGCAGTGTATGCAACAAGTCGTTTAAGCACGAAGCAGTGTTGCGAAGGCATCAACTTGTTCATATAAGGAAAAACCTAAAAATTTACAAATGTGATAGATGCTCATTCAAATTCGCAGACCCTGACCAATTGAGTGACCACTTCCTATGGCATTCTAATCCCAATGTCTTTGAATGTGTAGAATGTGGAATCAAGTTCATGCGAAGATACACCTTAGAGGCACACCTAAAAAATCATACCGAATCAAATCTTATAAAGTGTGAACAATGTAGTAAAGTGTTTCGGACTACGCTGAATCTTAAGGAACATCTACTATGGCACGCGAATCCAGAACTTTTTGTTTGTAATGTTTGCAACAAATCATTCACCCGAATTCCAAAATTAGAGAAACACAAAGCCTGGCATGAGAATCCAGACATATATGATTGCAATATCTGCGGTAAGAAATATATGAACCTAACGTCGCTACAGAATCATAAAAGATCACATTTGAAAACTGATGCGTCTGGATGTGAAAACTGTAAGAAATTAAATTGTGAGAAATGCATTTTTAAATGCGAGGTTTGTGCCGAGCAGTTCTTACAAAAATCGAAATTAGAAGAGCATCGATTAATTCATGTGAAGGGATTTGTTAAATGCGATAAATGTGATAaaatatttgctgaaaattcttccATAAAAGACCACGAATATCATCATGGTCCGCCGTTCAAGTGCGACGAATGCGGCAAAAGTTATAAACATAGTTATTTGCTGAAAAATCATAAGAAAATACACTCGAAAATAGAGGACTATAAATGCAAAGAATGTGGAAAAACCTTTGCGAAACGTGTATGGCTAAAAGATCATCGAATGTGGCATGCTAATCCGGAAGTTTTCAAATGTAATATCTGTGGTAAATGCTTTGGATTGAGGGTGAAATTACACGCTCACGAGCAACGCCATGCTAATCCGAATTCGAAGTTACGAGATTTTCGGGATAAAATTAAAAAGGAGCCATAA
- Protein Sequence
- MNQVYKFRTQYELKSRKLNKHLRNIDSTSTEHATAEIKDTNVKIQDNLPEDIKLELKSNFFDSKFTTFKQESIKDKYVKEEYFSESDEIEVSDFKYNLQQYSEQPEILMKIETENENLSSASHTSTNNQGLALNTPTNTEDSHQLTEFTSFLCEICKAKFETVDQLKNHMKLHSCRYLQCDICFEVFNHILTFMKHKKDHAALPPNYECKLCKRTFHGQKAMKNHEDAHRKQLVCSICGNQYSHPPRLLEHLIWHASPDSFKCEICNSTFKETAKLVRHRAHHEEGRLNCTKCDKSFDKPFLLRYHETMAHSSEQYNCNQCDASFNSAQKLKKHLYVHANVKTLTCEVCNQVFDNLNHLNDHRIWHSNPEAFKCSVCNKSFKHEAVLRRHQLVHIRKNLKIYKCDRCSFKFADPDQLSDHFLWHSNPNVFECVECGIKFMRRYTLEAHLKNHTESNLIKCEQCSKVFRTTLNLKEHLLWHANPELFVCNVCNKSFTRIPKLEKHKAWHENPDIYDCNICGKKYMNLTSLQNHKRSHLKTDASGCENCKKLNCEKCIFKCEVCAEQFLQKSKLEEHRLIHVKGFVKCDKCDKIFAENSSIKDHEYHHGPPFKCDECGKSYKHSYLLKNHKKIHSKIEDYKCKECGKTFAKRVWLKDHRMWHANPEVFKCNICGKCFGLRVKLHAHEQRHANPNSKLRDFRDKIKKEP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -