Oorn070031.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- -
- Assembly
- GCA_963969285.1
- Location
- OZ017739.1:410209714-410211003[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.8e-06 0.0012 22.3 1.7 2 23 74 95 73 95 0.98 2 13 2.3e-05 0.0099 19.4 4.0 1 23 100 122 100 122 0.97 3 13 3.4e-05 0.014 18.9 0.3 2 23 127 148 126 148 0.96 4 13 4.8e-06 0.002 21.6 2.8 1 23 154 176 154 176 0.97 5 13 9.1e-05 0.038 17.5 2.0 1 23 182 204 182 204 0.96 6 13 0.00021 0.087 16.4 0.5 2 23 209 230 208 230 0.95 7 13 2.8e-05 0.012 19.1 1.2 1 23 236 258 236 258 0.96 8 13 2.8e-06 0.0012 22.3 2.6 1 23 264 286 264 286 0.98 9 13 0.0016 0.69 13.6 2.3 2 19 291 308 290 314 0.93 10 13 8.4e-08 3.5e-05 27.1 0.3 1 23 320 342 320 342 0.98 11 13 1.7e-06 0.00073 22.9 0.1 2 23 347 368 346 368 0.95 12 13 5.2e-05 0.022 18.3 0.6 1 23 374 396 374 396 0.94 13 13 9.8e-07 0.00041 23.7 0.5 3 23 404 424 403 424 0.96
Sequence Information
- Coding Sequence
- ATGTTTAAATCGACTGCTTCGGAAAGTAATGAAGCAACTGACTCTGGCTGTGAAATCCACAAACTTGAAGTTAGCGGCGTAATGTCTGAAATAGCGCCTTCCTTTAAATTGCAAGAAGTATCCGAAGAAGGATCATTAACCGAAAAGAACAATGAAAATAAGATTAAGAACACTTTAAGTGGGGGACATAAATCTTCGCCTTCTATTTCGAAATCAAATAAGTGTGATCAATGCGATAAGTCATTTACTAAATTAAAAAACTTAAAGGATCATCTAGCCACACATAAGAATGCCATCTATAAGTGTGAAACATGTGAGAAACCTTTTAAGTCGCGCAAATCCTTGAAACGGCATAAATTTTCACACTCTAATCAAAACAAATGTGTTGAATGTGGTAAATCCTATTCCGTATTACAAAATTTAAAAGAGCATATGGACCTCCACGCGTATCCTGATCGCTATAGATGTGATGAATGTGGAAAATCATGTTCTAcctcaaaaaaattaaaacaacatctAGCTCTGCATACGAATCGCGGCAGCTATAAGTGTGATAAATGTGGGAAATTGTTTAATTCATCACAATCTCTCAAGTTGCATGAATTTTCACATTCTGATCAAAATAAATGTTACGTATGTGGTAAATCATTTGCCTCATTTCGATATTTAAAAGAACATGTGGACCTCCACTCTAATCCTGATTGCTATCGGTGCGATGAATGTGGGAAATCATTTTCTACCTTACGATGGTTAAAATTCCATCTAACAATGCATTCGAATGTAGACGGCTATAAGTGTGATGAATGTGGGAAATCGTTTAAATTAGCACAATATTTGAAGCGGCATAAATTCACACATTCTAATCTAAACAAATGTGGTGAATGCGGTAAATCATTTTCACGATTAAGCATTTTAAAAAAGCATTGCAAGCAAGCATTGCACACAAATCCTTACCTCTATGAATGCGATGAATGTGGAAAGTCCTTTAGGAGACCAGCAAGTTTGAAGGAGCATAAATTGATGCATTCGGGCTCAGttaaatgtgatgaatgtggTAAATCATTTATTAGAGCTCGAAACTTAGAAATCCACCGAGCCTTGCATTTGAATCCGTACTGCTACAAGTGTGAAATATGTGAGAAGTCATTCACTTCTCCGTCAATTCTTAAGCAACATAAAGTCTTGCACCCGAATCCAGACCTTAATAATTGCAATGAATGTGGAAAATCATTTTCCTCCTTAAAGAACTTACAAATTCATCAAGCGTTGCATACGAATCCCGAACACTAA
- Protein Sequence
- MFKSTASESNEATDSGCEIHKLEVSGVMSEIAPSFKLQEVSEEGSLTEKNNENKIKNTLSGGHKSSPSISKSNKCDQCDKSFTKLKNLKDHLATHKNAIYKCETCEKPFKSRKSLKRHKFSHSNQNKCVECGKSYSVLQNLKEHMDLHAYPDRYRCDECGKSCSTSKKLKQHLALHTNRGSYKCDKCGKLFNSSQSLKLHEFSHSDQNKCYVCGKSFASFRYLKEHVDLHSNPDCYRCDECGKSFSTLRWLKFHLTMHSNVDGYKCDECGKSFKLAQYLKRHKFTHSNLNKCGECGKSFSRLSILKKHCKQALHTNPYLYECDECGKSFRRPASLKEHKLMHSGSVKCDECGKSFIRARNLEIHRALHLNPYCYKCEICEKSFTSPSILKQHKVLHPNPDLNNCNECGKSFSSLKNLQIHQALHTNPEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -