Oorn144487.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- -
- Assembly
- GCA_963969285.1
- Location
- OZ017742.1:219560256-219562905[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00012 0.05 17.2 1.6 1 23 120 143 120 143 0.97 2 18 0.00036 0.15 15.6 1.2 3 23 153 173 151 173 0.97 3 18 0.071 30 8.4 0.3 1 23 179 201 179 201 0.93 4 18 0.0013 0.56 13.9 3.8 1 23 207 229 207 229 0.98 5 18 0.00016 0.068 16.7 0.7 3 23 302 323 300 323 0.97 6 18 0.0001 0.042 17.4 1.5 3 23 333 353 331 353 0.97 7 18 0.00023 0.099 16.2 0.3 1 23 359 381 359 381 0.98 8 18 2.9e-05 0.012 19.1 4.3 1 22 384 405 384 408 0.92 9 18 1.1e-05 0.0047 20.4 3.3 1 23 475 498 475 499 0.96 10 18 0.00083 0.35 14.5 0.4 3 23 528 549 526 549 0.95 11 18 0.0069 2.9 11.6 0.2 3 23 561 581 559 581 0.92 12 18 0.0044 1.8 12.2 1.8 1 23 587 609 587 609 0.97 13 18 1.7e-06 0.00072 23.0 0.4 1 23 615 637 615 637 0.98 14 18 0.00062 0.26 14.9 1.0 1 23 643 665 643 665 0.98 15 18 2.9e-05 0.012 19.1 1.2 1 23 671 693 671 693 0.98 16 18 3.4e-05 0.014 18.9 0.2 1 20 699 718 699 721 0.93 17 18 5.3e-05 0.022 18.3 1.2 2 23 728 749 727 749 0.96 18 18 5e-05 0.021 18.4 0.4 1 23 755 777 755 777 0.98
Sequence Information
- Coding Sequence
- ATGATTTCGCCAGAAGTTTCTTGTTATGAAGAATACAATATTAAGAAAGAAGAATGTGTGGAATACATGGAGGAATATGTGGAGTATTTAGAAGATGTGAAGAAAGAACTTGCTATTAATTCCAAACAAATAGTCTTTGAAAACGATACGGCCAAGTGCGGGGAAGTGATGCGAGAAATCAAACCGGAAGCTTCAAGAAGTGCTTCAAATATTGTTCAAAAGGAACTGGATACTGTAATTTTAGATACTATTGCCTCCTCAGATTGCAACGACAATATAAGTTCGAGGGTCGAAGTTTCCAACGGCGAAGAAAGTACTCCTGTCGAAATATCCAATGACTCCACGAAAGTAGGAGAATTTGTTTGTAAACTTTGTGGACGCAGCTACCAAGCTTTAAGTTCTTACAGGAGGCATATGAGGAATCGGCACCCTAACGGTGTTCCAGACCAGATTAACTGCAAATACTGTTATAAAGAATTTCAAGATTTGATGCAATTGGAAACACACACTCGAACACATACAGGAAAGAAGCGTTATGTTTGTCCACTGTGCCCCAAGCTCTTTGACAGCAGTCAAAGTCGCCAATTTCATATTAACGTACACAACGGCGAGCGTCCTTACAAATGTCCTCACTGTCCAAGAGCTTTTGCCGATTCACGTACTTGTGAAAGGCACAAACGTGAGCATCTTGAAGCATCAAATCAGAGTGACAGCGAACCCGAATCGTCGCCACCAAAAAATATGCCAGATCCCATTCGAAAGGGACCTGAAGTCATTATTGTAGATACCACTGTTTCTACCGATTGCAGGGAAAATGAGGATTTAACGGAAGATGTTTCCAATTGCGCGGAAACGACTACTGTCGCAATAACCTCTGAATCTTCCCAAGTAGGTGAATTCGGTTGCCCGATTTGCGGGCGTAGCTACCAGGCTATGAGTTCCTACAGGAGACATATGAGGAAACGGCACCCTGACGGGGTGCCAAAACAAATTATTTGCCATTACTGTTATAAAGAATTTGACGACATGTTCCAATTAGAAAAACACGTTCGCACACATTCCGGCCCGAAGCGTTATGTTTGTCCGTCCTGCCCCAGAACCTTTGTTAACAACCGTATGCGTCAGGCTCACATTTACACGCATACCGAGTATAAATGTGCTCACTGTCCAAAAACTTTCCGCCATCAAATTAATTTATGGAAGCACGAACGTTTAAAAAAACATTCTCGTCATAACGAGGAAAACAGTATCAGCTCCGTCTCACCACAGCAAGAAATCAAACCGGAATCGTCGTCTCTTGAATCAAAAATCGACAATACTGCCTCGTCGGATTGCAAGGAGAATGAGGGTTTGAGAGACGGTGGTTCCAGTTCTGAAGAAAGTGTAGACGAAATAATCTCTAACTGTTCCGAAGAAGAGCAATTCATTTGTGGACAGTGCGGGCTCAGCTATCAAAGAAAGGATTCCTTGAAGAGACACATGAGGAAAAAGCACCATAACAGAAAAGAAGATGTTTCGACTTGCGATGACGCTGAAGGAAAAACGACGGTCGTAAGTCCTAATGAAAAGGAAGAAATCAATTGCGAATTATGTGAGCGCAGCTATAAAACTAAGGAAGGCTACAGGGCGCACGTGAAAAAAGTACATGAAGAGAAAAAATATGATGTGGACCCGACGATTTGCATCTACTGCGATAAAAAATTCGACGACGTAGCGCAACTTAAGACACACGTTGTCACACATACCGGCCGAAGACGTTTTGTTTGCCCGCACTGCCCCAAACTCTTTTCCGACAGAAAAGTTCGTCAGTATCATGTCAACACGCATACCGGCGAGCGCCCTTTCAAATGTTCTCTCTGTCCAAGAGCCTTTGCCCATCCAACTAATCTTGAGAGCCATATACGTGCACATCTCAAAATAAAGAAGTTTTCTTGCCGTTACTGTGACAAGCGCTTCGTTCAAAGTTTCGAAAGGGTAGCTCATGAAAGAATTCATACAGGCGAGAGACCATTCCAATGTGAAGAGTGCGGTAGGCGTTTCATATCGCGTGTTAAACTGACGGAGCATAGCAAGAGACACAATAATATAAAACCCTATGTTTGTACGGTATGCGATAAAGCGTTCTACAATTCAAATCTGCTCAAAGATCATATGCCAATACACACAAATGAACGaccttggcattgtaatgtctgTGGCAAGAATTATCCAAGAAGAAAATCATTGGCACTTCATATGAAGTTACACTCCAGCGAGAAGACATACGTATGTGATATATGTGGAGAAGCTTTTTTCCAGAGCACTGGCTTATATACACATCGAAAATCACACGGCGACAAGCTATAG
- Protein Sequence
- MISPEVSCYEEYNIKKEECVEYMEEYVEYLEDVKKELAINSKQIVFENDTAKCGEVMREIKPEASRSASNIVQKELDTVILDTIASSDCNDNISSRVEVSNGEESTPVEISNDSTKVGEFVCKLCGRSYQALSSYRRHMRNRHPNGVPDQINCKYCYKEFQDLMQLETHTRTHTGKKRYVCPLCPKLFDSSQSRQFHINVHNGERPYKCPHCPRAFADSRTCERHKREHLEASNQSDSEPESSPPKNMPDPIRKGPEVIIVDTTVSTDCRENEDLTEDVSNCAETTTVAITSESSQVGEFGCPICGRSYQAMSSYRRHMRKRHPDGVPKQIICHYCYKEFDDMFQLEKHVRTHSGPKRYVCPSCPRTFVNNRMRQAHIYTHTEYKCAHCPKTFRHQINLWKHERLKKHSRHNEENSISSVSPQQEIKPESSSLESKIDNTASSDCKENEGLRDGGSSSEESVDEIISNCSEEEQFICGQCGLSYQRKDSLKRHMRKKHHNRKEDVSTCDDAEGKTTVVSPNEKEEINCELCERSYKTKEGYRAHVKKVHEEKKYDVDPTICIYCDKKFDDVAQLKTHVVTHTGRRRFVCPHCPKLFSDRKVRQYHVNTHTGERPFKCSLCPRAFAHPTNLESHIRAHLKIKKFSCRYCDKRFVQSFERVAHERIHTGERPFQCEECGRRFISRVKLTEHSKRHNNIKPYVCTVCDKAFYNSNLLKDHMPIHTNERPWHCNVCGKNYPRRKSLALHMKLHSSEKTYVCDICGEAFFQSTGLYTHRKSHGDKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -