Oorn066337.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- -
- Assembly
- GCA_963969285.1
- Location
- OZ017739.1:369333394-369339822[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.12 50 7.7 0.8 2 17 174 189 173 190 0.91 2 18 1.2e-05 0.0049 20.3 0.7 1 23 260 282 260 282 0.97 3 18 6.1e-05 0.026 18.1 0.5 1 23 288 310 288 310 0.96 4 18 0.00036 0.15 15.6 0.8 1 23 316 338 316 338 0.96 5 18 2.1e-06 0.00087 22.7 0.7 2 23 345 366 344 366 0.96 6 18 1.3e-05 0.0055 20.2 0.8 1 23 372 394 372 394 0.98 7 18 3.6e-05 0.015 18.8 1.8 1 23 400 422 400 422 0.94 8 18 3.9e-06 0.0017 21.8 1.1 1 23 428 450 428 450 0.96 9 18 2.5e-05 0.011 19.3 3.8 1 23 456 478 456 478 0.98 10 18 6.7e-05 0.028 18.0 5.2 1 23 484 506 484 506 0.98 11 18 3.4e-05 0.014 18.9 0.6 1 23 512 534 512 534 0.96 12 18 0.00049 0.2 15.2 3.7 1 23 540 562 540 562 0.97 13 18 3e-05 0.013 19.1 1.3 2 23 569 590 568 590 0.97 14 18 1e-06 0.00044 23.6 0.5 1 23 596 618 596 618 0.95 15 18 2.5e-06 0.0011 22.4 0.8 1 23 624 646 624 646 0.96 16 18 3.4e-06 0.0014 22.0 0.5 1 19 652 670 652 674 0.95 17 18 2.4e-05 0.01 19.4 0.4 1 23 680 702 680 702 0.96 18 18 0.00024 0.1 16.2 0.5 2 20 709 727 708 729 0.93
Sequence Information
- Coding Sequence
- ATGGATGTCGACCTGCCTCAGTATATATGTTTGAAATGTAAAAATGGATTAAAAGAGATGTATGAATTCAAGTTACTCTATAGAAGTACTACCGCTAGAATTAAACGTTTATTTTATGCAAAAGAAAATACATCGTATCAAGATGAACGTGAAATTTTTCGAAAAGCTTATGAAAATTGCAGTGAACTAAAATTATGCACCTACGGGAAAGATATACAATTAGAATTGGATACTTCAAAAGCCGCCGAATCTTCTGGAACGgacaaaaataattataaaatgaaTCCTAGTGAGAGTGTAGTTTCAGAGGAGTATTCGTTTACCATATATGAAGTTCAAAATCAGAAGAATATTATCAGAACAAATGCAGAAAATGCCTTGAGTGGAAATAGAGCTGATGACGAAATTTTCGGACAGGTTGGCTTTTATGACAAAGAAGCGAAAACTAGCTCAATAATTGTCAAAGACATTGACGAGACACATATAGATTCAGTGAAGGCTTCAGATTCAGAAATCAAATCTTGTGATCAATGTGGCCAACCCTTTAAAAATGAGACTAACTTCAATAATCAGAGGCAAACACAAAACATATTCACGTGTCTAAAATGCCAAGATGTGTTTTTCAAGACTGAGTTTGAAACCTACGAGGAGATAAACTCCGGGTTTGATAAACTACTTGAAGATGCTCACTCAGCGAATAGACTCGAAGATCGCTTAAACCCATCAAGATTAAACGAAGCATGTGAAAGCAGCCAAAAAGTGCACAATAAAATCGAATATAATTGTGAGGAGTGCGGAAAGAAATTTAGTCGTCCCGAAGTTTTCAGGACGCACCAATTATTACACTCTTTTCCTGATCTATACAAGTGTGAAATATGTGGCAAATCATTTGATGGACCCCTACAGTTTGAAAAGCATAAGTCTTTACATCCCAACCCAGATTTGTATAAGTGCGATAAATGTGAAAAATCATTTTCccgtttgaatattttaaaagaacataTAGATTTACACACCAATCCTAATTTATTAAAATGCAATGAGTGTGGCAAATCATTTGATCGACGGGAATCTTTAGAaaatcacaaaatatcacatGCGAATTTCAGTCTTTACAAGTGCGAGAAATGTGAAGAGTCATTCAAAACGTTAGAGGCTTTGCGGACGCATAGAATTAGCCATTCGAAAGGACGCTCCCACACATGCGATAAATGCGGTAAGTCATTTACGCAGTTGAGGTATTTGACTGAACATGAAGCTTTACATTTAAATCCCGACACATACAAATGTGACGAGTGTGGGACTACTTTTAAGACATCCAGAAGTTTAAAAATACACAAGGCATTACATTTAAACGCCGTCGTTTACAAGTGTGCGCAATGTGGCAAGACATTCAGTCATTTAAAGACACTTAAAACTCACGAAAAATTACATTTGAATCCAGATCTGTACAAATGCGAATTATGTGGGAAATTGTTCAAACAATCACATCACTTGACAATGCACAAAGCCACACATTTACATCCGGATCCATATGAATGTGATAAATGTGGGAAGTCATTTAAAGTATTGACGTCTCTAAACTTACATAAAGAGTGGCATTTGAATCCCAATCTATATAAGTGCGACCGGTGTGAAAAGACATACAATCATTCACGATATTTAAAGGAGCACCAAGCTTTACATTTAAATCCAGATTTAAATAAGTGCGAATATTGTGGAAAACTATTCAAGCAGGTCCAATCTTTGAAGCGACATCAGGCATCTCACTCCAGTCCTGACTTGTATAAATGTGATGAATGTGGCAAATCGTTTAATAGACAGCAGTCTTTGGAAGCTCATTTTGCTTTACATACTAACCCCGATCTGTATAAATGTGAGATGTGTGGCAGATCATTTACTCGTTTGCAAAACTTGAACGAACATAAGGCTTTGCACTTGAATCCCGATTTGTATAAATGTGAAATATGTGGAAAATCATTTACACGTTTGCAGAGCTTGAATGCACACAAACCATTGCACTCAAATCCCGATCTTTATAAGTGTGAAATATGTGATAAGTTGTATACACGACCACAGCAACTGAAAGCTCATAAAGCATTACATGTGAATCCTGATTTAAGTAAATGCGAGAAGTGCGGAAAATCATTCAGTGAGGTACAATCTTTGAGAAGGCATAAAGCCTCATATTGCAACGTCGACATAAATATAGCATATTTATAA
- Protein Sequence
- MDVDLPQYICLKCKNGLKEMYEFKLLYRSTTARIKRLFYAKENTSYQDEREIFRKAYENCSELKLCTYGKDIQLELDTSKAAESSGTDKNNYKMNPSESVVSEEYSFTIYEVQNQKNIIRTNAENALSGNRADDEIFGQVGFYDKEAKTSSIIVKDIDETHIDSVKASDSEIKSCDQCGQPFKNETNFNNQRQTQNIFTCLKCQDVFFKTEFETYEEINSGFDKLLEDAHSANRLEDRLNPSRLNEACESSQKVHNKIEYNCEECGKKFSRPEVFRTHQLLHSFPDLYKCEICGKSFDGPLQFEKHKSLHPNPDLYKCDKCEKSFSRLNILKEHIDLHTNPNLLKCNECGKSFDRRESLENHKISHANFSLYKCEKCEESFKTLEALRTHRISHSKGRSHTCDKCGKSFTQLRYLTEHEALHLNPDTYKCDECGTTFKTSRSLKIHKALHLNAVVYKCAQCGKTFSHLKTLKTHEKLHLNPDLYKCELCGKLFKQSHHLTMHKATHLHPDPYECDKCGKSFKVLTSLNLHKEWHLNPNLYKCDRCEKTYNHSRYLKEHQALHLNPDLNKCEYCGKLFKQVQSLKRHQASHSSPDLYKCDECGKSFNRQQSLEAHFALHTNPDLYKCEMCGRSFTRLQNLNEHKALHLNPDLYKCEICGKSFTRLQSLNAHKPLHSNPDLYKCEICDKLYTRPQQLKAHKALHVNPDLSKCEKCGKSFSEVQSLRRHKASYCNVDINIAYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -