Oorn066348.2
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- -
- Assembly
- GCA_963969285.1
- Location
- OZ017739.1:369535595-369550165[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3.4e-05 0.015 18.9 2.9 1 23 206 228 206 228 0.98 2 19 1.2e-05 0.0049 20.4 4.9 1 23 234 256 234 256 0.99 3 19 1.5e-06 0.00063 23.2 0.9 1 23 260 282 260 282 0.97 4 19 4.2e-07 0.00018 24.9 0.4 1 23 288 310 288 310 0.98 5 19 0.00016 0.066 16.8 0.9 1 23 316 338 316 338 0.93 6 19 8.1e-05 0.034 17.7 0.4 2 23 343 364 342 364 0.96 7 19 2.9e-06 0.0012 22.2 0.9 1 23 370 392 370 392 0.96 8 19 0.0056 2.4 11.9 0.4 1 23 396 418 396 418 0.94 9 19 3e-07 0.00013 25.3 1.0 1 23 424 446 424 446 0.97 10 19 0.0033 1.4 12.6 0.6 1 23 457 479 457 479 0.95 11 19 0.00021 0.087 16.4 3.8 1 23 485 507 485 507 0.97 12 19 0.037 15 9.3 2.2 2 23 512 533 512 533 0.93 13 19 1.3e-06 0.00054 23.4 0.3 1 23 539 561 539 561 0.98 14 19 5.2e-06 0.0022 21.5 1.5 1 23 567 589 567 589 0.96 15 19 0.00013 0.057 17.0 0.6 2 23 594 615 593 615 0.96 16 19 3.2e-07 0.00014 25.2 2.9 1 23 621 643 621 643 0.97 17 19 2e-05 0.0086 19.6 0.2 1 23 647 669 647 669 0.98 18 19 4e-05 0.017 18.7 1.6 1 23 675 697 675 697 0.98 19 19 1.7 7.4e+02 4.1 0.0 5 23 705 723 704 723 0.92
Sequence Information
- Coding Sequence
- ATGAAGGAAATGCTGCTATCACCGAATAAACATAAAGATGGAGCCATTATCCTAAGGAAATTAATCAAAAGCAAACGCAAAAAAGGCACGAGAAACGCCAACGGCCACGAAGATGCTAATTTAAATGTCTACAATCAGGAACTAATTTTGCCGGATGACGTGACGGAAATGAAAGATCATCTCGACGGCAAAGATACATCAGATGAGGGAAACGAAACGCAGTCAGCAAAACCCGGGTCGAGCTCAAATTCAGAGAATAATAACAATGGCCAATGTaacaaaatatacaaaactaaaacTGACCACATCTATGGACAACAAAATTCATTTCGAAGGCAACGCACGTCCCTAGATAGTGCAAAATTAGTAAATCATATCAATAAATACATAGTCGAAATATATAAATCGGCAGACTGGCAGAGCAAAGAAGCAGCTATCTCTGAGCCCGAAAATGATATGTCTGAAGAAGAAGACGTAACATGTGAGGATACGACTTCATTGAAATCGCAAGAACTGGCGCCAAATGATCCTTTGAGTGAAACGCACAAAAATGCTGACTTTGCGAGAGACTCAAGTGGCAATAAGCACATCGCCTTGCactcgaatatcaaaatttacaCATGTAAAATATGTGGTAAGACTTGCATAAGTTATAATGGTTATAGGCAACATATGCGCTGGCACTCAAATCAAGACTCTTATAAGTGCGATAAATGTGAGAAGTCCTTTCGATTAAAAAGTTATTTGAAGAAACATAACAAGACTCATTCTGATTTACATCAATGCGATAAATGCGGCAAATCATTTGCTAAACCAGAGAGCTTTAAAGCCCATATGGCCTTGCACTCGAATCCCGACCTCTATAAATGTGATTTATGTGGAAAGGCTTTCTCGCGATCGGACGTTTTGAAACAACATATGCTGTTGCACTCCAATCCCGATATTCATAAGTGCGATGAATGTGGGAAAACGTTTACGGCTGCTGCTAGTTTGGATCGACATAAATTTGGACATTCTGATTTAAATAAATGTGACATATGCGGTAAATCATTTACTACGTTACTATACTTTCAAGAGCACTTAGCATTGCATCAAAATCCCGATCTTTATAAGTGCAATAATTGTGAAAAATCATTTACCTCAGCAAGTGCTTTGAAACAACATAGCGcatcgcattttaatttatttgtatGTGTTCAGTGTGGTAAAGCGTTTCAATCATTCAATAGTTTTAAAATTCATGAAGCCTTGCATATGAATCCCGATCTCTTTAAGTGCGATAAATGTGGGAAATCATTCAATTCAAAAAGTGGATTGAAGGAACATCAAGTGGTTCATACTGGTTCAAAGATACAAGTCGATGGTTTATTTCAATGCGATGAATGCGATGTATCATTTACGTTGCTCAAAAACTATATAGACCATTTCTCCTTGCATTCAACCCCCGGCCTCTATCATTGTGACATTTGTGGAAATTCTTTTAGGTCAACCAAAAGTTTGAAACAACATCAAATGTTTCATTCTAATCAAGGTCAATGTTATAAGTGCAGTAAAACGTTCGCGACATCGGAAGGTTTAAAATGCCATCTAGCCTTACATTTGAATCCCGAACTCTTTAAATGTTTTTTATGTGGAAAAGCGTTCTCTGGAGCGGGCACTTTAAAGCGACATATGATGTGGCACACCAATCCCGATGTCTTCAAGTGCGATAAATGTGGCAAGAAGTTTAAGTCAATAGATGGTTTGCAACGACATCAATTTGCTCATTCTAATTTGAATAAATGTGACGTATGTGGTAGATCCTTTACTTCATTCGAATACTTCAAAGATCATTTAGCTTTACACAAGAACCCTGATCTTTATAAATGCGATACATGTGGAAAGTCCTTTACGTCCGCAAGCCATTTGAGGCAACATAAGGCTTCACATTTTGATGTATTTAGGTGTGTTGAATGTGGTAAATCATTTTCCGCATTTAACAGCTTAAAAGCTCACATAGCTTCTCATGAGAATGCCGACGCATATAAGTGCGATCAATGTGGGGAAACATTTAATACAATACATTCAttacaaatacacaaaatttctcATACTGATGTACAGAAACGTAATGAATGTGGTGAATCAATTGCTTCATTAAAAAGCTTGGAAGTTCATAAAGCTCTCCATTAA
- Protein Sequence
- MKEMLLSPNKHKDGAIILRKLIKSKRKKGTRNANGHEDANLNVYNQELILPDDVTEMKDHLDGKDTSDEGNETQSAKPGSSSNSENNNNGQCNKIYKTKTDHIYGQQNSFRRQRTSLDSAKLVNHINKYIVEIYKSADWQSKEAAISEPENDMSEEEDVTCEDTTSLKSQELAPNDPLSETHKNADFARDSSGNKHIALHSNIKIYTCKICGKTCISYNGYRQHMRWHSNQDSYKCDKCEKSFRLKSYLKKHNKTHSDLHQCDKCGKSFAKPESFKAHMALHSNPDLYKCDLCGKAFSRSDVLKQHMLLHSNPDIHKCDECGKTFTAAASLDRHKFGHSDLNKCDICGKSFTTLLYFQEHLALHQNPDLYKCNNCEKSFTSASALKQHSASHFNLFVCVQCGKAFQSFNSFKIHEALHMNPDLFKCDKCGKSFNSKSGLKEHQVVHTGSKIQVDGLFQCDECDVSFTLLKNYIDHFSLHSTPGLYHCDICGNSFRSTKSLKQHQMFHSNQGQCYKCSKTFATSEGLKCHLALHLNPELFKCFLCGKAFSGAGTLKRHMMWHTNPDVFKCDKCGKKFKSIDGLQRHQFAHSNLNKCDVCGRSFTSFEYFKDHLALHKNPDLYKCDTCGKSFTSASHLRQHKASHFDVFRCVECGKSFSAFNSLKAHIASHENADAYKCDQCGETFNTIHSLQIHKISHTDVQKRNECGESIASLKSLEVHKALH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -