Oorn080894.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- -
- Assembly
- GCA_963969285.1
- Location
- OZ017740.1:73851597-73867581[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.24 99 6.8 0.4 1 15 82 96 82 99 0.85 2 23 0.016 6.9 10.4 1.7 1 20 129 148 129 150 0.93 3 23 4.3e-05 0.018 18.5 0.3 1 23 157 179 157 179 0.96 4 23 1.8e-05 0.0077 19.7 1.8 1 23 185 208 185 208 0.97 5 23 1.2e-05 0.0051 20.3 3.1 1 23 214 236 214 236 0.97 6 23 6.9e-05 0.029 17.9 1.4 1 23 241 263 241 263 0.95 7 23 0.00036 0.15 15.6 0.5 1 23 269 291 269 291 0.98 8 23 1.2e-05 0.0051 20.3 0.9 1 23 297 319 297 319 0.97 9 23 5.5e-05 0.023 18.2 3.0 1 23 326 348 326 348 0.96 10 23 1.8e-05 0.0078 19.7 1.0 2 23 355 376 354 376 0.97 11 23 4.5e-06 0.0019 21.6 0.3 1 23 382 404 382 404 0.97 12 23 0.83 3.5e+02 5.1 0.9 1 10 411 420 411 422 0.92 13 23 0.28 1.2e+02 6.5 0.2 2 17 431 446 431 447 0.89 14 23 0.003 1.3 12.7 2.5 1 23 471 493 471 493 0.95 15 23 0.00024 0.1 16.2 0.3 1 23 499 521 499 521 0.94 16 23 0.00011 0.046 17.3 1.6 1 23 527 550 527 550 0.97 17 23 1.2e-05 0.0051 20.3 3.5 1 23 556 578 556 578 0.97 18 23 7.1e-05 0.03 17.9 1.5 1 23 583 605 583 605 0.95 19 23 0.00016 0.066 16.8 0.1 1 23 611 633 611 633 0.98 20 23 3.1e-06 0.0013 22.1 1.0 1 23 639 661 639 661 0.97 21 23 2e-05 0.0086 19.6 0.5 1 23 667 689 667 689 0.96 22 23 0.0001 0.043 17.4 0.4 1 23 695 717 695 717 0.97 23 23 4.7e-05 0.02 18.4 4.7 1 23 723 745 723 745 0.97
Sequence Information
- Coding Sequence
- ATGCAGGATGCAGTTGCTAATGGTATAAAAAACCGAGGTTGGTTGATTCACTTCAAGCAAAAGTTAGCTGCTCAAGCACATACGGTTAGGAGAGTGATGGTCAAACACTATCCACCCAGCTCTTTATCAACTAAGAACCTCGCACTCGACACCGCGATCTCCACTTTGAAGAGATATGCTTCATGCCGGGAATGCGCTTGTGGATTGCGAAAAGGTCAGCATCATGACGGCTTGAGGAAGCCTTATCCTTGTCAACAATGTGGGAAAGAATACTATCATAAAATTGACATCAAACGCCAAGCCAATTGCGAGGACTGTGGTAAACTAAGTTTGAATTCAGATGAATGCCGCAAGGCAAGTCAGcaaattttgaaggaaaaaatatataaatgtgaCAAATGTGATGAATCATTTCATCAACTTTATAGATATAAGATTCACAAAGCGTTACGCTCAAACCCAAATATTTTCAAGTGTGAGGAGTGCGGTAAGGTATTTGAAGGACCAGTGGGTTTGAAGCATCATAAAGAATTGCACTGGAATCCTGAATTatataaatgtgaaatttgcGGAAAGTGCTTATCTAGACAATCTCTTTTGGATGAGCATAAACTTACACAGCATTCCCATCCAAATCTCCATGTGTGTGAGGAATGCGGTAAATCATTCAAACTTAAGCGATATTTGACGACGCATAGGAAAGTTCATTTAACTGGTTTACACAAATGTGATGAATGTGGAAAATCGTTTAGACGATTGAATGCTTATGAAGACCACAAAGCGTTACACTTAGATCCTAATGTTTACAAATGCGAGGAATGTGGGAAGTTATTTGGAGCTCCTAGGGACTTGAAAATACACCATAATTTGCATTTGAATCCTGACTTATACAAATGCGAAGTTTGTGACAAATCCTTTACGAGACTGTTTGGTTTGAACGAGCATAAGTTATTGCATTTACAGCCGAACAAGGTCTATAATTGCGACGAGTGCGACAAATCTTATAAGCAGTTGAAAACGCTAAAACGCCATAAAACCAATCATTTATACCCGAACCTTCTTAAATGCAACCAATGTGATAAGATATTCAAAGATAAGCAACTTTGGACTGTACATATGAAACTACATTTGAATCCAGACCTATATAAATGCAACGAATGTGGAAAGTCATTTGCTATGCGTTCTTCTTATGCATCGCATATAGCTTTGCACTCAAATCCCGAGATGCTTTATCCTTGCCAACAATGTGGGAAGGAATTCTATCCTGATATTGACATCAAACACCAAGCCAAGTGCGAGGAGTGCCATAAATTATTCAAAGATGAGCGAAAGTTGATGGCAGATGAGAAACTAAATTTGAATCCTGACGAATGTGGTGAATCGAATCAGAATGTTTTGAAGAGAAACAAACACAAATGCGACAAATGTGGGGAATCGTTCGATCGACTTTATAGATATAAAATTCACAAAGCGTTACATTCAAACCCTAATCTTTACAAGTGCGAAGAATGTGATAAGTTATTTAAAGGACCAGTGGATTTGAAGCAACATAAAGTATTGCACTGGAATCCTGAGTTATATAAATGCGAAATTTGCGGTAAGTGCCTGTCTACGCAGCGTCTTTTGGACGAGCATAAAATAACGAACCATTCCCAATCAAATCTTCATGTGTGTGAGGAATGCGGTAAATCATTCAAACTTAAGCGATATTTGAAGACGCATAGGAAAGTTCATTTAACTGGTTTGCACAAATGTGATGAATGTGGAAAATCGTTTAAACGACTGAATGCTTATGAAGACCACAAAGCGTTACACTTAGATCCTAATGTTTACAAATGCGAGGAATGTGGGAAGTTATTTGGAACTCCTATTGTCTtgaaaatacaccaaaaattGCATTTGAATCCTGACTTATACAAATGCGATGTTTGTGAAAAATCCTTTACGAGACTGTCTAGTTTGAATGAGCATAAATTATTGCATGTACAGCCAGACCTTTATAAATGCGACGAATGTGGAAAGTCATTTGCTATGCGTTCTTCTTTTGCATCGCATAAAGCTTTGCACTCAAATCCCGAGATGTACAAATGTGATAAATGCGGGAAAATATTCGCTGCGCGCGAAACTTTAAGAGAACATAAATTGCTACATTTAAATCCCGATTTATATAAATGCGATGAATGTGGAAAAAAATATTCCCAAAAGCATTCTTTTAGAAGTCATAAAGCTTCGCATGTAAAATCAAATCATTCATAA
- Protein Sequence
- MQDAVANGIKNRGWLIHFKQKLAAQAHTVRRVMVKHYPPSSLSTKNLALDTAISTLKRYASCRECACGLRKGQHHDGLRKPYPCQQCGKEYYHKIDIKRQANCEDCGKLSLNSDECRKASQQILKEKIYKCDKCDESFHQLYRYKIHKALRSNPNIFKCEECGKVFEGPVGLKHHKELHWNPELYKCEICGKCLSRQSLLDEHKLTQHSHPNLHVCEECGKSFKLKRYLTTHRKVHLTGLHKCDECGKSFRRLNAYEDHKALHLDPNVYKCEECGKLFGAPRDLKIHHNLHLNPDLYKCEVCDKSFTRLFGLNEHKLLHLQPNKVYNCDECDKSYKQLKTLKRHKTNHLYPNLLKCNQCDKIFKDKQLWTVHMKLHLNPDLYKCNECGKSFAMRSSYASHIALHSNPEMLYPCQQCGKEFYPDIDIKHQAKCEECHKLFKDERKLMADEKLNLNPDECGESNQNVLKRNKHKCDKCGESFDRLYRYKIHKALHSNPNLYKCEECDKLFKGPVDLKQHKVLHWNPELYKCEICGKCLSTQRLLDEHKITNHSQSNLHVCEECGKSFKLKRYLKTHRKVHLTGLHKCDECGKSFKRLNAYEDHKALHLDPNVYKCEECGKLFGTPIVLKIHQKLHLNPDLYKCDVCEKSFTRLSSLNEHKLLHVQPDLYKCDECGKSFAMRSSFASHKALHSNPEMYKCDKCGKIFAARETLREHKLLHLNPDLYKCDECGKKYSQKHSFRSHKASHVKSNHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -