Oorn065521.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- -
- Assembly
- GCA_963969285.1
- Location
- OZ017739.1:358619489-358621637[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00015 0.063 16.9 6.6 1 20 180 199 180 202 0.94 2 18 2e-06 0.00085 22.7 0.9 1 23 208 230 208 230 0.98 3 18 0.00019 0.081 16.5 3.3 1 23 236 258 236 258 0.97 4 18 0.0015 0.62 13.7 5.5 1 23 264 286 264 286 0.96 5 18 0.00014 0.057 17.0 0.6 1 23 292 314 292 314 0.97 6 18 5.4e-05 0.023 18.2 1.8 1 23 320 342 320 342 0.97 7 18 3.3e-06 0.0014 22.1 0.2 2 23 349 370 348 370 0.97 8 18 6.8e-06 0.0029 21.1 0.1 1 23 376 398 376 398 0.98 9 18 5e-05 0.021 18.3 2.3 1 23 404 426 404 426 0.96 10 18 4.1e-06 0.0017 21.8 4.2 1 23 432 454 432 454 0.98 11 18 4e-07 0.00017 24.9 1.7 1 23 460 482 460 482 0.98 12 18 1.5e-05 0.0064 20.0 2.8 1 23 488 510 488 510 0.98 13 18 1.3e-05 0.0056 20.2 0.8 1 23 516 538 516 538 0.98 14 18 2.9e-07 0.00012 25.4 0.9 1 23 544 566 544 566 0.97 15 18 7e-05 0.03 17.9 0.7 1 23 572 594 572 594 0.98 16 18 9.9e-05 0.042 17.4 5.3 1 23 600 622 600 622 0.98 17 18 2.6e-06 0.0011 22.4 0.5 1 23 628 650 628 650 0.98 18 18 1.7e-05 0.0073 19.8 2.8 1 23 656 678 656 678 0.96
Sequence Information
- Coding Sequence
- ATGTGGACGGTGAAAGAGGAAATAGTAGACCCAGATATCTTAAAGCAGGAATTAAAGATGATGGTGCCCATAAAAACTGAACCTAATATCGATGAATACTATGAAGACTCGAGTAGTGATGGCTATGAATCCGAAACTGCATTTATGGAAAAGTTTTCGGCTCAAAGAGAACTGAAAAAGCACTCAAAAGAAATGTTAAAATCACTGGTGCCTCCAATAGAGATTAAAGAAGAATTAAATTTGGAAATGAACGTGGCGAATGATAATGCTGATCAAAAAGTAACACATAAATTGGAACCTTCGGTTATGCCGCCAAAGTTGGAAGAAGAATATCAACATGGATTAGAACTGATGAGACAACATTCTTCAGGGTTCTTACAAATACATAACACGCTAGAAAAACGAGAAGATACCAGTGCAAGTGAAGACTCACAAGACCAACGGATTTTCAGTTCAGGATATAAAAATTTCAATGACGAGGACTTAATGGAACCAATGGAGGTCGTAGATGGCCCGAAGAAAATTACTAAGCGTCTGTTTCGTTGCCATATCTGCCATAAAGCTTTTACACAAAAGCATTCCCTTAGCCATCACATATGGATACATTCAGATGTAAAGCCGTTTAAATGTGAGGAATGTGGGCGTCAATTCATCAATAGATCGTTGCTGAAATTGCACACCATGATGCACACGAATCCTGAAAACTTCAAATGTGAACATTGTGGAAAATTTTTTGTAGCAAAAACAAAACTTAAGGAACATCGTTTGTTACATTCAAATCCAGATATGTTCAAATGTCGTCAGTGTGATAAAAGGTTTCGCCATTTTGCTTCATTGAAGGAGCATACATTGTTTCATTCCGATCCAAATGCGTTCCAATGTGAGAAATGTGGAACAGCGTTCGAGAAGAAAATGCTTCTAAAAGAGCATACATTACTACACGAAAATCCAGATCTTTTCAAGTGCAAGTTGTGCGAGAAAGATTTCACTAGACTTAAAACCCTACAAGCACATGAAAAATTACATGAAAATCCCGCTCCCAACAAATGTCAGGAATGTGGAAAGATATTTGTTTATGCTTCCAGTTTAACGGCTCATTTAAAACTCCACGAGAATCCTGAAATGTTCAAATGTGAAGAGTGtggaaaaatttttgcaaatgggTCGGGTTTAAAGGAACACCAAAGCATACACACACATCCTGAAGGGTTCAAATGTGATCTTTGCAACAAAATTTACACGCGTAGATCCCTTCTAAAGGAGCATCGTTTGTTTCATATTAACCCAGATCGCTTCAAGTGTCACGATTGCGGTAAACGCTTCGGCCAAAAGTCATTGCTTAAACTCCATAAAAAATTGCATATAAATCCGGATATGTTCAAATGTGAAATATGCGGTAAAACATTCAAACAAGACTCTCAATTGAGAACTCATAGAATGTTGCATTCGACACCTGATATGTTTAAATGTGAAGAGTGCGGAAAAACATTTTCACATATATCAGTCTTGAGAAACCATAAGAAACTTCACTTATACCCTGACGGCTTTAAATGCGAGAAATGCGGAAAAACGTATGCTCGAGAAATTGAACTGAAGTACCATGTGATGAAACATTTGAATCCAGATGTCTTCAAATGTGATGATTGTGGGAAAACTTTTGCTAATAAATCAGTGTTGAAAAAACACCGAGACGTCCACCTAAATCCTCGCGGCTTTCAATGTGAAATATGCAAGAAAGTATTTACACGGGATACAGTTCTGGCAAAACATCGTATGCTGCATTTAAATCCAGAGCTTTTCAAATGCGATGACTGCGGTAAGACCTTCTCCCATCATCAAGTCCTTATGACCCATCGAAAATTGCACATCAATCCTAGTCTGTTCAAATGCGAAACATGTGGCAAGTCATTATCCACTAGCTCTGCGTTAATGGCACATCGAAAACTGCATGAAGAACCTAAATCATATTCATGTGAGGAATGTGGGAAGCAGTTTAGTTATAAGTGTTCTCTGACACGTCACGTGGTGTCGCACATGAAGAAAATGGTCAAAGAAGAAGCGATTGTTATTGAGGATGTTTCTTTAGATATCTAG
- Protein Sequence
- MWTVKEEIVDPDILKQELKMMVPIKTEPNIDEYYEDSSSDGYESETAFMEKFSAQRELKKHSKEMLKSLVPPIEIKEELNLEMNVANDNADQKVTHKLEPSVMPPKLEEEYQHGLELMRQHSSGFLQIHNTLEKREDTSASEDSQDQRIFSSGYKNFNDEDLMEPMEVVDGPKKITKRLFRCHICHKAFTQKHSLSHHIWIHSDVKPFKCEECGRQFINRSLLKLHTMMHTNPENFKCEHCGKFFVAKTKLKEHRLLHSNPDMFKCRQCDKRFRHFASLKEHTLFHSDPNAFQCEKCGTAFEKKMLLKEHTLLHENPDLFKCKLCEKDFTRLKTLQAHEKLHENPAPNKCQECGKIFVYASSLTAHLKLHENPEMFKCEECGKIFANGSGLKEHQSIHTHPEGFKCDLCNKIYTRRSLLKEHRLFHINPDRFKCHDCGKRFGQKSLLKLHKKLHINPDMFKCEICGKTFKQDSQLRTHRMLHSTPDMFKCEECGKTFSHISVLRNHKKLHLYPDGFKCEKCGKTYAREIELKYHVMKHLNPDVFKCDDCGKTFANKSVLKKHRDVHLNPRGFQCEICKKVFTRDTVLAKHRMLHLNPELFKCDDCGKTFSHHQVLMTHRKLHINPSLFKCETCGKSLSTSSALMAHRKLHEEPKSYSCEECGKQFSYKCSLTRHVVSHMKKMVKEEAIVIEDVSLDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -