Oorn069797.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- -
- Assembly
- GCA_963969285.1
- Location
- OZ017739.1:407432517-407440888[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0059 2.5 11.8 0.1 1 23 294 316 294 316 0.92 2 21 0.00063 0.26 14.9 3.6 1 20 322 341 322 344 0.94 3 21 2.5e-05 0.01 19.3 0.4 2 23 349 370 348 370 0.96 4 21 0.0013 0.54 13.9 2.4 1 23 376 398 376 398 0.96 5 21 0.19 82 7.1 2.1 1 21 401 421 401 422 0.94 6 21 0.00013 0.055 17.0 0.3 2 23 428 449 428 449 0.95 7 21 1.4e-05 0.0058 20.1 1.3 1 23 455 477 455 477 0.96 8 21 0.0001 0.043 17.4 1.0 2 23 482 503 481 503 0.95 9 21 2.5e-06 0.001 22.5 1.5 1 23 509 531 509 531 0.97 10 21 9.4e-05 0.04 17.5 0.5 2 23 535 556 535 556 0.96 11 21 4.4e-05 0.019 18.5 0.4 1 23 560 582 560 582 0.97 12 21 2.9e-05 0.012 19.1 5.4 1 23 588 610 588 610 0.96 13 21 6.9e-06 0.0029 21.0 0.9 2 23 615 636 614 636 0.96 14 21 4.7e-06 0.002 21.6 0.4 1 23 642 664 642 664 0.98 15 21 0.0019 0.8 13.4 2.2 3 20 748 765 746 767 0.94 16 21 2.8e-05 0.012 19.1 3.2 2 23 770 791 769 791 0.96 17 21 8.4e-07 0.00035 23.9 0.7 1 23 797 819 797 819 0.97 18 21 1.6e-06 0.00068 23.0 0.4 2 23 824 845 823 845 0.97 19 21 0.00026 0.11 16.1 1.1 1 23 851 873 851 873 0.96 20 21 2.4e-05 0.01 19.4 0.3 2 23 878 899 877 899 0.95 21 21 1.2e-05 0.005 20.3 0.2 1 23 905 927 905 927 0.98
Sequence Information
- Coding Sequence
- ATGCCTACCAAAcgaacgccagagaggaggaagttgaggtcggATGCTGGACCGACACTCCTGTGTTCCATGTGTCATGAGGACTCAGACGAGTCGACAAGCCAGACTCTGCCATGCGGGCATCGTTTACACCAGCTGTGCTTGAGCCAACTACGGCAAACATCTTCAACGTGTCCGCTCTGTCCAGAGCCTCTAGAGCCGACACCTATAGCGACAGAACGATCTCAGTCCTCCATCGCTAGTGGAGCAGTGTTCAAAGGCGCACCAACTACATTGGGTGCGCGCGGTGATGACAGTGGAGCCGGAGCCTTACCAACCAGCAGCCCCGGTACCGAACCCTCATCTTCAGCGTCACCCAAGAGGTCTCAGCTGCTGGTGGTCATGAAAGCTATGGCCGTCAGTATGGAACAGATGAGACAACAATTACAATGGCGGTCTGTTCCACAGCCAACTACCCAGCCTTCCACATCATCGGCCAGAGCGGACTACGTAGAGCCACTCGTAACTGTAGCGAGTGATCcagtacctcctaggctcagcggagccatgaaccccatggccccagaatACAGGCCCAGGGGAGATGTCCCGACTTCACGACCGCATCGAATAATTCGAGTGCCTGAAGCCCTGAGCGACAATTGTTCGAACAGGGATGATAGCTATGAGGAATGTGTCGAAGTATACAAAACTAAAATTAGCATCACAGGTGGGAAAGAGACTCCACGTAAAGGATCGACCAATTTGCAGTGCAACAAAGCGTTTAATTCTGAAGGTGACGACTTAACACAAGAATCATCCTTTAACCAATCCTTAACCGAAAACCAGTTTAAGGGAGTCTCTAAGGAGGATACGGATTTACGTTCGAATTCTAATTACTATAAATGTGATGAATGCGATGAATCATTTGTTGATATACGAAGCAAGCAAGCCCATGCAGCCTTGCACCCGAAGCTCAAAATCCACAAGTGCAAGAAATGTGAGAAATCGTTTACGTCAGCACGAAGTTTAAAAGAGCATAAATGGTCACATTCTGGGGAAAATAAATGTCCTGAATGCGGTAAATCATTTTCTAGACTACAACGCTTCAAAATACACATAGCCTGGCATAAGAATCCTGAACTCTATAGATGTGGTCAATGCGGGAAATCATATCAGACAGCTCACTCTTTTCAGGAACATAAAGTTTCACATTATGACTATAAGTGCGATAGATGTGAGAAATTGTTGAAGACAGCACGAAGTTTGAGGGAGCATAAGTGTTCCGAATCTGAATTAAATCGATGTGCTCAATGTGGCAAATCGTTTGCCAGATTAATCAGTTTGAAAACTCATCTAGCCTTACATAAGAATCCCGACCTCTTTAAATGTGATAAATGTGGAAAATCTTTATCGTCAGCATATAATTTGAAGACACATAAGGGTTCACATTCTGATTTGAATAAATGTGATAAATGCGGCAAATCATTTGTTACGTTACGGCTTTTAAAATACCATTTAGCCTTTCACGAGAGTAGCGAACTTTATAAATGTAATAAATGTAAAAAGGCTTTCGCTCATCCAGATTTGTTGAAGAGTCACATGGACTGGCATAGAAATCCTAAGTGTGATATATGTGGTAAATCATACAAGTCATTACAAGGTCTGGAACGACATAAAGTTTCACATTCTGATTTATATAAATGTGATGAATGTGATAAATCGTATGCTACATATAAAAGTTTAAGTGACCATCTTGCCTTACATAAGAATCCAAAACTTTATAAGTGCAAAAAATGTGGGAAATCCTTCAGATCAGAAGCATATTTGAATCATCATAAATTTTCACATTCTGGTTCAAATAAATGTGAAAAATGTGGTAAAACATTTAAACGCCTACAAACTCTGCAAGCTCATTTAGCCTTGCATTCAAATCCTGAACTCTATAAATGTCCCATATGCAAAAAAGCTTTTGCTACCGATGCATATTTCAAAAGACATATGGCCTTGCACTCGAATCCCGATCTCCATAAGCATAAAAGTGGTGAGACAGAGGCTTCACATCAAGAATCGACCAGTTCGCTGAGCAACAAAGCTTTTAAAGCTGAAGATGTCAACTTAAAGCAAGAAGTATCTGAGCGCGTATATGCTTTACATTCGATTTCTTATTGCCATAAAGGTAATAAATACGGTGAATCGTGTGTTGATTTACGAAGGCAACAAGCCCTTATACCTTTGAACACAAATCACAAAAGTTATGGGTGCAAGAAATGTGAGAAATCGTTTAGGACAGCACGAAGTTTGAGAGAGCATAAGTGCGAGTTAACTAAGTGTACGGAATGCGGTAAATCCTTTTGCAAATTAAGTACCTTGAAAACTCATCTAGCCTTGCATAAGAATCCACACCTCTACAGATGTGATAAATGTGGAAAATCCTTTAAGTCAGCTGGTTATTTGCAGGAACATCAAGTGTCACATTCTGACTTAAGTAAATGTAATGAATGTGGTAAATCATTTGCTAGATTACGAAATTTAAGACTTCATTTAGCGGTACACTCGAATCCCGATATTTATAAATGTGGTAAATGTGATCGATCCTTTCAAACAGCTCAATCACTGAATGAGCATGAATTTTCACATTCTACTCTAAACAAATGTAGTGAATGTGGTAAAGCGTTTCAACGACAACGAGATTTAAATGCACATTTAGTTTTGCATTTGAATCCACAACTCTATCAATGTACAGTATGTGGAAAGGCTCTCGCTActtcaaaaagtttgaaaaatcatcttgcTTCGCATTCTGATCGTTAG
- Protein Sequence
- MPTKRTPERRKLRSDAGPTLLCSMCHEDSDESTSQTLPCGHRLHQLCLSQLRQTSSTCPLCPEPLEPTPIATERSQSSIASGAVFKGAPTTLGARGDDSGAGALPTSSPGTEPSSSASPKRSQLLVVMKAMAVSMEQMRQQLQWRSVPQPTTQPSTSSARADYVEPLVTVASDPVPPRLSGAMNPMAPEYRPRGDVPTSRPHRIIRVPEALSDNCSNRDDSYEECVEVYKTKISITGGKETPRKGSTNLQCNKAFNSEGDDLTQESSFNQSLTENQFKGVSKEDTDLRSNSNYYKCDECDESFVDIRSKQAHAALHPKLKIHKCKKCEKSFTSARSLKEHKWSHSGENKCPECGKSFSRLQRFKIHIAWHKNPELYRCGQCGKSYQTAHSFQEHKVSHYDYKCDRCEKLLKTARSLREHKCSESELNRCAQCGKSFARLISLKTHLALHKNPDLFKCDKCGKSLSSAYNLKTHKGSHSDLNKCDKCGKSFVTLRLLKYHLAFHESSELYKCNKCKKAFAHPDLLKSHMDWHRNPKCDICGKSYKSLQGLERHKVSHSDLYKCDECDKSYATYKSLSDHLALHKNPKLYKCKKCGKSFRSEAYLNHHKFSHSGSNKCEKCGKTFKRLQTLQAHLALHSNPELYKCPICKKAFATDAYFKRHMALHSNPDLHKHKSGETEASHQESTSSLSNKAFKAEDVNLKQEVSERVYALHSISYCHKGNKYGESCVDLRRQQALIPLNTNHKSYGCKKCEKSFRTARSLREHKCELTKCTECGKSFCKLSTLKTHLALHKNPHLYRCDKCGKSFKSAGYLQEHQVSHSDLSKCNECGKSFARLRNLRLHLAVHSNPDIYKCGKCDRSFQTAQSLNEHEFSHSTLNKCSECGKAFQRQRDLNAHLVLHLNPQLYQCTVCGKALATSKSLKNHLASHSDR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -