Oorn066346.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- -
- Assembly
- GCA_963969285.1
- Location
- OZ017739.1:369507310-369523089[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0024 1 13.1 1.1 2 23 209 230 209 230 0.95 2 19 5.6e-06 0.0023 21.4 1.6 2 23 237 258 236 258 0.95 3 19 1.4 5.8e+02 4.4 0.1 5 15 271 281 270 284 0.79 4 19 0.0011 0.47 14.1 0.8 1 23 296 318 296 318 0.94 5 19 2.3e-05 0.0096 19.4 0.4 2 23 323 344 322 344 0.96 6 19 2.8e-07 0.00012 25.4 1.8 1 23 350 372 350 372 0.98 7 19 4.4e-07 0.00018 24.8 1.0 2 23 377 398 376 398 0.96 8 19 1.2e-05 0.005 20.3 1.7 1 23 404 426 404 426 0.95 9 19 6.5e-06 0.0027 21.1 0.5 2 23 431 452 430 452 0.96 10 19 5.4e-07 0.00023 24.5 0.7 1 23 458 480 458 480 0.98 11 19 3e-06 0.0013 22.2 0.3 1 23 497 519 497 519 0.99 12 19 1.6e-05 0.0068 19.9 0.7 2 23 523 544 522 544 0.95 13 19 0.00013 0.053 17.1 1.8 1 23 550 572 550 572 0.97 14 19 7.1e-07 0.0003 24.2 0.1 2 23 577 598 576 598 0.97 15 19 0.00025 0.1 16.2 1.0 1 23 604 626 604 626 0.97 16 19 4.6e-06 0.0019 21.6 2.0 1 23 632 654 632 654 0.98 17 19 3.3e-05 0.014 18.9 0.3 1 23 658 680 658 680 0.97 18 19 1.9e-06 0.00079 22.8 3.1 2 23 687 708 686 708 0.95 19 19 8.2e-08 3.5e-05 27.1 2.4 1 23 714 736 714 736 0.98
Sequence Information
- Coding Sequence
- ATGCTGCTATGCTCTGGGCGACATGTAGCTGAATGTTCCTCAAGCGTAGATAAAGACCATAGTAAAAGGAACGACAATCGTAAAGAAAGTGAAACAGAAGTTGTTGTGAACAAGGATCAAAGAAAACTGGCTGGCGAAGATATGTCCATTTACAATACTATTTTGAAAGAGGAAAAGCATCTTCTGCAAAGTCAAGATGACGCTTTGAAGGAAGCGCAAGATCATCTGCATCACAAGGGAAAGTCGAATGAAGAACAACAAACTTCGTTGTCAAATGCACTTACAGGCTCGGATGTAGAGATAAACATATGTCAGATACGTAACGAAGTATACCGAACGAATGATGATCTTACGCGTAGGGAATCAACCTCACCCAAACAACCACATGTGTGCCGGGAAATTGATGCATTGCCATTGCAATTGACTGAAGTGCAAAATAACAAATCAATAATTTCTGATTCTGAAACCCACAAAACGGAAGGATGCGACGTAACGCTTGAAGATACTTCTTGCTTGGATCTACACCCAACACCCACAAAAAGGCAATTATTCCGAAAATATAGCGGAACGCAGCTGGCGAAGGATCAGGAGTACAAAGCttcacatttaaattcaaaattaaacaGATGTGAAAAATGCGATAAAACGTTCACTTCATTGCGAATCCTAAAAACCCATTTAGCCTTGCATAGTAATCCCAACCTACTTAAGTGCAATGAGTGTGGAAAATCTTTTAGATCGGCACATAGCTTGAAGGAACACGAAGATTCACATTTTGATTTAATTAATCTAGACCTTTATAAGTCCGATAAATGTGGAAAATCTTTTAGATCAGCACCTAGATTAAAGGAATACGAAAATTCTTATTTAACTAAACCCGTCCTACATAAGTGCGGTGAATGTGGAAAATCTTTTAGGTGGGCACAAAGCTTGAAGGAACACGAAGATTCACATTCAGATTTAATTAAGTGTAATATATGCGATAAATCATTTGGTACGCTTCGAACGTTGAGAAATCATCTAGCATTGCATTCGAATCCCAATCTTTATAAGTGCAGTGAATGTGGTGAATCCTTTACGAATTCAAATAATTTGAGGCAGCATCAATTTTCACACTCTAATCTGAATAAATGTGAAGAATGTGGCAAAACATTCACCAACTTACGAAATTTAAAAAGACATTTAGCCCTGCACTCAAATCCCGACTTATTTAAGTGTGGCGAATGCGGCAAATCCTTTACGACAGCATTTACTTTGAAGGAGCATAAGTTTTTACATTCTAATCAGAATAAATGTGGTGAATGTGGCAAGTCATTTTCCATGTCGCGAAATTTAAAAAGTCATTTAGCCTGGCACTCGAATCCAGATTTATTTAAGTGTGATGAATGCGGCAAATCATTTACTAATGCAACAAATTTAAATGGGCACAAACTTtcacatttgaaaaattttcagaaTCATAAGGCCTCGGAATTGCACCCTGATGGTTATAAGTGCGATGAATGCGGCAAAGTTTACGCGACAGCAAACCGATTGAAGGAACACATAAAATCACATTCAGTCAGTAAGTGTGATGAATGCGGCAAATCGTTCACTACATCACAATACTTTAAAGAGCATGTAGCCCTGCATAAGAACCCCGACCTCTATAAGTGCGATAAATGTGGGAAAACATTTATGAAAGCACTACATTTGGAAGAACATAAAGCTTCACATGCTGGTTTAATTAAATGTGATGAATGCGATAAAATATTTACTAGATGGCGAAATTTAATAGCTCATTTAGCCTCGCACTCGAACCCCAAAGGTTTTAAGTGTCACATGTGTGGAATGGTATTTGAACTGCCAGAAGTTTTTAAAAGACATATGACTTGGCATATGAATCCCGACCTGTATAAATGCGATAAGTGTGAGAAATCCTTTACAACACTACAAAGTTTGGAGCGACACAAAATTTCACACTTCGATTTATATAAATGTAATCAATGCGGTAAAACATTTGGATCCCTAGGATACTTTGAAGTTCATTTAGCTTTACATTCAAATCCTGAACTCTGTAAATGTGAAAAATGCGGAAAGACATTCACTCATCCGGTAGCTTTAAAGAATCACATGATTTTACATTTGAATCCTGATCAATACAAGTGTGACAAATGTGGGAAATCCTTTTCAGTGTCACAAAATTTGAAGCGACATCAAAAGTTACATTTTGAATTAACTGAATGTGATTAA
- Protein Sequence
- MLLCSGRHVAECSSSVDKDHSKRNDNRKESETEVVVNKDQRKLAGEDMSIYNTILKEEKHLLQSQDDALKEAQDHLHHKGKSNEEQQTSLSNALTGSDVEINICQIRNEVYRTNDDLTRRESTSPKQPHVCREIDALPLQLTEVQNNKSIISDSETHKTEGCDVTLEDTSCLDLHPTPTKRQLFRKYSGTQLAKDQEYKASHLNSKLNRCEKCDKTFTSLRILKTHLALHSNPNLLKCNECGKSFRSAHSLKEHEDSHFDLINLDLYKSDKCGKSFRSAPRLKEYENSYLTKPVLHKCGECGKSFRWAQSLKEHEDSHSDLIKCNICDKSFGTLRTLRNHLALHSNPNLYKCSECGESFTNSNNLRQHQFSHSNLNKCEECGKTFTNLRNLKRHLALHSNPDLFKCGECGKSFTTAFTLKEHKFLHSNQNKCGECGKSFSMSRNLKSHLAWHSNPDLFKCDECGKSFTNATNLNGHKLSHLKNFQNHKASELHPDGYKCDECGKVYATANRLKEHIKSHSVSKCDECGKSFTTSQYFKEHVALHKNPDLYKCDKCGKTFMKALHLEEHKASHAGLIKCDECDKIFTRWRNLIAHLASHSNPKGFKCHMCGMVFELPEVFKRHMTWHMNPDLYKCDKCEKSFTTLQSLERHKISHFDLYKCNQCGKTFGSLGYFEVHLALHSNPELCKCEKCGKTFTHPVALKNHMILHLNPDQYKCDKCGKSFSVSQNLKRHQKLHFELTECD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -