Oorn066321.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- -
- Assembly
- GCA_963969285.1
- Location
- OZ017739.1:369045069-369052332[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0013 0.53 13.9 0.4 2 23 226 247 225 247 0.91 2 22 8.8e-06 0.0037 20.7 2.7 1 19 253 271 253 275 0.95 3 22 6.6e-05 0.028 18.0 0.9 2 23 283 304 282 304 0.94 4 22 1e-05 0.0043 20.5 4.6 1 23 310 332 310 332 0.97 5 22 0.00012 0.05 17.2 0.2 2 23 337 358 336 358 0.96 6 22 0.031 13 9.6 1.6 1 21 364 385 364 387 0.86 7 22 5.9e-07 0.00025 24.4 0.9 1 23 393 415 393 415 0.96 8 22 0.00042 0.18 15.4 1.7 1 23 421 443 421 443 0.97 9 22 0.00017 0.071 16.7 0.2 2 23 447 468 446 468 0.95 10 22 5.1e-07 0.00022 24.6 3.7 1 23 474 496 474 496 0.98 11 22 0.0003 0.12 15.9 0.4 2 23 501 522 500 522 0.95 12 22 0.0011 0.45 14.2 0.9 1 23 528 550 528 550 0.95 13 22 1.5e-05 0.0061 20.0 0.6 2 23 555 576 554 576 0.97 14 22 1.3e-06 0.00053 23.4 1.1 1 23 582 604 582 604 0.98 15 22 2.4e-06 0.001 22.5 1.3 1 23 610 632 610 632 0.96 16 22 1.2e-06 0.00049 23.5 0.9 2 23 637 658 636 658 0.96 17 22 6.5e-06 0.0027 21.1 1.3 1 23 664 686 664 686 0.98 18 22 0.0003 0.13 15.9 0.4 2 23 691 712 690 712 0.96 19 22 7.8e-05 0.033 17.7 4.9 1 23 718 740 718 740 0.98 20 22 2.2e-05 0.0093 19.5 0.6 2 23 745 766 744 766 0.94 21 22 2.3e-05 0.0096 19.4 2.9 1 23 772 794 772 794 0.97 22 22 2.5e-06 0.0011 22.4 2.1 1 23 800 822 800 822 0.96
Sequence Information
- Coding Sequence
- ATGAATAAGTACCTACCACAGCATATTTGTCTTCAATGCAACGACGAATTGCAGCAGACCTACAGCTTTAAATTGCTTTATGCAATTACTTCTGCTAAACTTAAAAATATGCTGCTTCCCCTGGAGAGTACTGTTGCTGGATTCCCGTCGGCGAATCTACTCGTAAACAAGTGTAAGCATGAAACTACCATTATCTGGCAATCAGACAATAGCGAAAGTGATCATAGTGAAAGTGAAGCTAAATACTATAAAGGTTTAACTTGCAGTGATACAAATGAAGCTGATGTTAAAACTGCTGTTTTGAATGCGTGCAATCGTAAATTTATTCTGAAAACGGAACCAAGTCCAAAAGATAATAAACAAGATTATTTAAAGGAAAAGGATTCTCAAGAtgataaagtaaaagaaaatgaagaaattcaTCTGAAGCTGACAAAATTAATGACGATCTCGGAGTCAGAggaTAATTCAAACAAGCAATGTGATCAAGTATCCGAAACTGAAAATGACCTCATAGATGTCAAACCAACTTGCCTCGAACAAGAACACATACGCCAAAATCATGAAGATGAAAATTGCGTCGCAGCGGCTCAAAATTCCCGACAAGCAGCTTCTACTCCAACACTAAATGAAAAAACAAGGCATAAAGCCTTGCAGTTATCTACTGTTTTAAAAAAATGTGCTCCATGCGGCAGATCGTTTCGTCAATTACGAAGCTTAAAAGCACATTTAGCTTTGCATAAGAATCCAAATCTTTATAAATGCGACAAATGTGGGAAGTCTTTCACATCCGCGCATAGTTTGAAGAACCATAAACCATTACATTCAGATTTGAATAATTTAATGAAATGTGATGAGTGCGGTAAATCTTTTGCCAAATTACGTAACTTTAAGAACCATGTTGCCTTTCATAAGAATCCCGATCTATTTAAGTGCAATGTATGTGATAAGGTCTTTTCAACAGTGCACAATTTAAAGAAACACAAATTTTCACATTCTAATCTTAATAAATGTGATGAATGTGGTAAGTCATTTGCAAGTTTACGAGACTTCAGTGTCCATTTAGCCTTGCATAACAATCCCGATCTCTTTAAGTGCAAAGAAAACTGTGGTAGATCTTTTAATTCCTTACGAAAGCTCAAGTTCCATGAAGCCTTACATCAGAACCCGGACCTCTATAAATGTGAAATATGTGGAAAGTCATTCAGTCAACCAGAATGTTTGAAGCAACATGTAGCTCTGCATACAAATCCCGACTCTTACAAATGTGACATATGTGGGAAATCGTTTGCAATAGTTCATAGGTTGAAGCAACATAAACTTTCACATTTGACTGATAAATGTGAAGAATGCGGAAAATCGTTTGCTACTTTGCGAAGGCTAACAGATCATGTAGCTTTGCATAAAAATCCCGACCTCTTTAAGTGCGATCAATGCGGGAAATCTTTTACGACATCAGACTATTTGAGACACCACACTGCAACACATTCTGATTTGAATAAATGTGGCAAATGCGGTAAGTCATTCGGTACATTACGAGCTTTGAGAGTTCACAAAGCATTGCATATAAATCCCGAACTCTACAAGTGCGATGAATGCGGCAAAGTCTTTGCTTGTGCACAAagtttaaaagaacataaagcattACACTCAGATTTAAATAAATGCGGCAAGTGTGGCAAATCATTTGCCACGTTACGAAGCTTAAAAGCACACACAGCCTCGCATGAACATTCTCACGTATATAAATGCAATGTTTGCGGAAAGACATTCGTTAGACGAGACTTTTTCGAGAAACATATTGTCATGCATTCGAAGCCCGATCTCTACAAGTGCGATGAATGCGGGAAATCTTTTAAGAGAGAAAATAGTCTGAGGGAGCATAAAGTTTCTCATTCTGATTTAAGTAAATGCAATGATTGCGGCAAATCATTTTCTACACTGCGAAGCCTAAAAGTCCACCTGCTATTGCATAAGGATCCTGACTTCTTTAAATGCGCTGAGTGTGATAAGTCTTTTAGTGCAGCATATAGCTTAAAGAAACATCAGTTTTCACATTCAAGATTAAATAAATGCAACGAATGCGGACAATCATTTGCAAGTTTTCGAGATTTTACTGTCCATCTAGCCTTGCATAAAAATCCCGAGCTCTTTAAGTGTGACAAATGTGATAAGACCTTCAAGAAAGAACATAGTTTGAAAGAGCATAAAATTTCGCATTCAGATACAAGTAAATGTGATGAATGTGGTAAATCATTTGTTACGTTACACAGCTTGAAAGTACATGCAGCCTTACATAAAAATCCGGATCTCTATAAATGTGAAATATGTGGAAAGAAATTCTACCATCCGAAATCGTTCAAGATACATAGAGCTTTGCACTCGAACCCAGACCTTTTTAGGTGTAATATATGTGGTAAGACATTCTCCCAACCGCAATATTTTAAGAAACATAAGGCCCTGCATTCGCGTCCAAGACTCAATATGAATATTGTACAAAATCGTTCACCACAACTTCATATTGTTTGA
- Protein Sequence
- MNKYLPQHICLQCNDELQQTYSFKLLYAITSAKLKNMLLPLESTVAGFPSANLLVNKCKHETTIIWQSDNSESDHSESEAKYYKGLTCSDTNEADVKTAVLNACNRKFILKTEPSPKDNKQDYLKEKDSQDDKVKENEEIHLKLTKLMTISESEDNSNKQCDQVSETENDLIDVKPTCLEQEHIRQNHEDENCVAAAQNSRQAASTPTLNEKTRHKALQLSTVLKKCAPCGRSFRQLRSLKAHLALHKNPNLYKCDKCGKSFTSAHSLKNHKPLHSDLNNLMKCDECGKSFAKLRNFKNHVAFHKNPDLFKCNVCDKVFSTVHNLKKHKFSHSNLNKCDECGKSFASLRDFSVHLALHNNPDLFKCKENCGRSFNSLRKLKFHEALHQNPDLYKCEICGKSFSQPECLKQHVALHTNPDSYKCDICGKSFAIVHRLKQHKLSHLTDKCEECGKSFATLRRLTDHVALHKNPDLFKCDQCGKSFTTSDYLRHHTATHSDLNKCGKCGKSFGTLRALRVHKALHINPELYKCDECGKVFACAQSLKEHKALHSDLNKCGKCGKSFATLRSLKAHTASHEHSHVYKCNVCGKTFVRRDFFEKHIVMHSKPDLYKCDECGKSFKRENSLREHKVSHSDLSKCNDCGKSFSTLRSLKVHLLLHKDPDFFKCAECDKSFSAAYSLKKHQFSHSRLNKCNECGQSFASFRDFTVHLALHKNPELFKCDKCDKTFKKEHSLKEHKISHSDTSKCDECGKSFVTLHSLKVHAALHKNPDLYKCEICGKKFYHPKSFKIHRALHSNPDLFRCNICGKTFSQPQYFKKHKALHSRPRLNMNIVQNRSPQLHIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -