Oorn066264.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- -
- Assembly
- GCA_963969285.1
- Location
- OZ017739.1:368024897-368026948[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00028 0.12 16.0 0.8 2 23 13 34 12 34 0.96 2 23 4.2e-05 0.018 18.6 1.2 1 23 40 62 40 62 0.96 3 23 5.5e-05 0.023 18.2 0.4 1 23 68 90 68 90 0.96 4 23 9.8e-07 0.00041 23.7 1.3 1 23 96 118 96 118 0.97 5 23 1.5e-05 0.0064 20.0 0.9 1 23 124 146 124 146 0.93 6 23 0.00013 0.053 17.1 3.7 1 23 152 174 152 174 0.93 7 23 6.2e-06 0.0026 21.2 0.7 1 23 180 202 180 202 0.98 8 23 0.00012 0.05 17.2 1.2 1 23 208 230 208 230 0.97 9 23 0.0037 1.6 12.5 1.4 1 23 236 258 236 258 0.96 10 23 0.00016 0.068 16.8 1.8 1 23 264 286 264 286 0.96 11 23 1e-05 0.0042 20.5 2.5 1 23 292 314 292 314 0.97 12 23 9.9e-05 0.042 17.4 0.1 1 23 320 342 320 342 0.96 13 23 1.3e-07 5.4e-05 26.5 1.1 1 23 348 370 348 370 0.99 14 23 0.014 5.7 10.7 0.1 1 23 376 398 376 398 0.94 15 23 0.00013 0.053 17.1 3.7 1 23 404 426 404 426 0.93 16 23 6.9e-07 0.00029 24.2 1.3 1 23 432 454 432 454 0.98 17 23 0.00012 0.05 17.2 1.2 1 23 460 482 460 482 0.97 18 23 0.0011 0.46 14.1 1.0 1 23 488 510 488 510 0.95 19 23 0.00017 0.073 16.7 2.0 1 23 516 538 516 538 0.96 20 23 6.9e-05 0.029 17.9 1.9 1 23 544 566 544 566 0.97 21 23 2.8e-05 0.012 19.1 0.1 1 23 572 594 572 594 0.96 22 23 1.4e-07 6.1e-05 26.3 0.7 1 23 600 622 600 622 0.99 23 23 0.0044 1.8 12.2 0.4 1 23 656 678 656 678 0.94
Sequence Information
- Coding Sequence
- ATGCATAAAGCTCTGCATGCCAATCCAGACCTCAATAAATGCAAAGAATGCGGAAAATCATTTGCAAAGGCACAATCACTGAAATTTCATATGGCTCTTCATTTTAACCAAGATCTATTTAAGTGCGATTTATGCGGGAAAACGTATACAACACCGGATAGATTAAAATATCATAAAATTTTACATGCAAATCCAAACTCATATCAGTGTGAAGTGTGTGAAAAAACATTTAAGGAACCAACGTTGCTTAATACACACAAAGCTTTGCATGCAAATCCGGACTTATATAAATGCAAAGAATGCGGAAAATCGTTTGCGAATTCCTGGAGATTGAAAAAACATCTGAGTCTTCATTCTAATCCTGATTTGTTTAAGTGCAATCTATGTGGAAAGTCTTTTAAAAGCGCCGACACATTTAGAGAGCATGAAGTTTTACATTCAAACCCTGATCAATTTAAGTGTGATTTGTGTGGAAAATCGTTCAAAAAATCCAATGCATATAGACATCATAAAGCTTTGCACTCGAATCCAGACAAATATAAATGCGAAGAATGTGGAAAATTGTTTAGAAATCGCAAAGGATTGAATTATCACATGGCTCTGCATATTAAGCCTTATTTATTCAAGTGCGATTTATGTGGAACGACATTTAGGACAGAGCGTTCATATAGAGATCATAAAGCGGTTCATTCCAATCCCAACACCTTCAAATGTGATATATGCAACAAATTGTTTTTAAGTTCATCTAATTACAATAATCATAAAGCTCTGCATGCCAATCCAGATCTCCATAAATGCAATGAATGCGGAAAATCATTTGTAAAGGCACAATCACTGAAATTTCATATggctcttcattccaaccaagaTCTATTTAAGTGCGATTTATGCGGGAAAACGTATGTAACACCGGATAAATTAAAACATCATAAAAATTTGCATGTCAATCCAAACACATATCAGTGTGAAGTTTGCGAAAAAACGTTTAAGGCACCAACGTTACTTAACGCACATAAAGCTTTGCATGCAGATCCAGACTTATATAAATGCAAAGAATGCGGAAAATCGTTTCCGAATTCCTGGAAAATGGAAAAGCATATGAGGCTTCATTCCAATCCTGATTTGTTTAAATGCAATCTATGTGGAAAGTTGTTAAAAAGTGCTGGTGCATATAAAGAACATGAAGCTTTACATTCAAACCCTAATttatttaaatgcgatttgtgtGGAAAATCGTTCAAAAAATCCAATGCATATAGACATCATAAGGCTTTGCATTCGAATCCAGACAAATACAAATGCGAAGAATGCGGGAAATCGTTTAGAAAACGCAAAGGATTGAATGATCATATGACTCTGCATATTAAGCCTTATTTATTCAAGTGCGATTTATGTGGAACGACATTTAGGACAGAGCGCTCATATAGGGATCATAAAGCGGTTCATTCAAATCCCGACACCTTTAAATGTGATATATGCAACAAAGTGTTTTTAAGTTCATCTAATTACAGCATGCATAAAGCTCTGCATGCCAATCCAGATCTCCATAAATGCAAAGAATGCGGAAAATCATTTGCTAAGGCACAATCACTGAAATTTCATATGGCTCTTCATTTCAACCAAGATCTATTTAAGTGCGATTTATGCGATAAAACGTATACAACACCGGATAGATTAAAATATCATAAAAATTTACATGTTAATCCCAATACATATCAGTGTGAAGTGTGTGACAAAACGTTTAAGGCGCCAACGTTGCTTAATGCCCATAAAGCTTTGCATGCAAATCCGGACTTATATAAATGCAAAGAATGCGGAAAGTTGTTTGCGAATTCCTGGGCATTGAAAAAGCATATGCGCCTTCATTCCAATCCAGATTTGTATAAGTTCAATCTACGTGGAAAGTCGTTAAATAGCACCAATGTATTTAAGAAACATGAAGCTTCAGATTCAAATCCTGATTTATTTACGTGTAATTTGTGTGGGAAATCATTGAAAACCGGCATTGCATATAGACGTCATAAAGCTGCACATTCAGATTCCGAAAAGTAG
- Protein Sequence
- MHKALHANPDLNKCKECGKSFAKAQSLKFHMALHFNQDLFKCDLCGKTYTTPDRLKYHKILHANPNSYQCEVCEKTFKEPTLLNTHKALHANPDLYKCKECGKSFANSWRLKKHLSLHSNPDLFKCNLCGKSFKSADTFREHEVLHSNPDQFKCDLCGKSFKKSNAYRHHKALHSNPDKYKCEECGKLFRNRKGLNYHMALHIKPYLFKCDLCGTTFRTERSYRDHKAVHSNPNTFKCDICNKLFLSSSNYNNHKALHANPDLHKCNECGKSFVKAQSLKFHMALHSNQDLFKCDLCGKTYVTPDKLKHHKNLHVNPNTYQCEVCEKTFKAPTLLNAHKALHADPDLYKCKECGKSFPNSWKMEKHMRLHSNPDLFKCNLCGKLLKSAGAYKEHEALHSNPNLFKCDLCGKSFKKSNAYRHHKALHSNPDKYKCEECGKSFRKRKGLNDHMTLHIKPYLFKCDLCGTTFRTERSYRDHKAVHSNPDTFKCDICNKVFLSSSNYSMHKALHANPDLHKCKECGKSFAKAQSLKFHMALHFNQDLFKCDLCDKTYTTPDRLKYHKNLHVNPNTYQCEVCDKTFKAPTLLNAHKALHANPDLYKCKECGKLFANSWALKKHMRLHSNPDLYKFNLRGKSLNSTNVFKKHEASDSNPDLFTCNLCGKSLKTGIAYRRHKAAHSDSEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -