Oorn066342.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- -
- Assembly
- GCA_963969285.1
- Location
- OZ017739.1:369405825-369423483[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 4.9e-05 0.021 18.4 3.4 1 23 346 368 346 368 0.98 2 22 0.0013 0.55 13.9 2.7 1 23 372 394 372 394 0.93 3 22 2.9e-06 0.0012 22.2 1.3 2 23 401 422 400 422 0.95 4 22 3e-05 0.013 19.0 0.3 2 23 427 448 426 448 0.95 5 22 5.9e-05 0.025 18.1 0.2 1 23 454 476 454 476 0.95 6 22 1.4e-06 0.00057 23.3 2.2 1 23 482 504 482 504 0.95 7 22 0.0028 1.2 12.9 0.1 1 22 508 529 508 530 0.80 8 22 1.4e-06 0.0006 23.2 1.6 1 23 536 558 536 558 0.98 9 22 0.00022 0.095 16.3 0.4 2 23 563 584 562 584 0.95 10 22 1e-05 0.0043 20.5 1.8 1 23 590 612 590 612 0.96 11 22 4.6e-05 0.019 18.5 0.1 2 23 617 638 616 638 0.96 12 22 0.0021 0.89 13.2 0.1 1 23 644 666 644 666 0.97 13 22 0.00036 0.15 15.6 1.8 1 23 672 694 672 694 0.96 14 22 4.8e-05 0.02 18.4 0.2 2 23 699 720 698 720 0.96 15 22 1.3e-06 0.00057 23.3 0.5 1 23 726 748 726 748 0.98 16 22 0.049 21 8.9 1.8 2 23 753 774 752 774 0.96 17 22 2e-06 0.00084 22.8 1.0 1 23 780 802 780 802 0.96 18 22 0.00011 0.047 17.3 1.9 1 23 807 829 807 829 0.96 19 22 4.5e-05 0.019 18.5 1.3 2 23 834 855 833 855 0.96 20 22 5.2e-08 2.2e-05 27.7 0.6 1 23 861 883 861 883 0.98 21 22 5e-06 0.0021 21.5 2.6 1 23 889 911 889 911 0.98 22 22 6e-05 0.025 18.1 0.3 1 23 917 939 917 939 0.96
Sequence Information
- Coding Sequence
- ATGTTGCCGTATCTGCGAAACGAGGGAAAATTTGCAATTGCTCTTCGAAACAGGAAACAAGAGAATTCTCCGAATGCTTCGATCGATTGCATCTTTACCGgtAAAAATGTAATCAAAGGGGAAAAAGCCAACATCCGCGGTGATGCTCATGACGCTGAAGAAAAAATGGTTGAAAATAAGACATATTCCATAGGTAATCCAGTAGACGACTTTAAGAGATTACACGATGATGCAGGTGACAAAGGAAAGGCTAATGAAGAAATAGAAACGGAGGAGAAAAAAGAGAGGTCGGACTCGGATGCAGAAAGCAAGCGCCAAAATGCTGAAAACGAAGAAGACCCAGAGGAAATTTGGGTGACCAAAGAGATTGGGGAAGAAGAGGTTCACACAGAATCTAGTGAAAAAGTGACTATCGACTTAGACAAGCCATTCGCTGCTGAAAGATCACCATTCTCAAAAGTGGAAAGTAAAATCAGACCTAAGCGGATTCGAATGAATGATTGTGATGAAGAAGGTAAAGTTGCAGCAAATCCCGTTGCGGGTCATTCAGTGGTAAGCAAAAATACATCCAACAAACAAGTCATTAAGTCTAACGAGATTCTACCACCTGCCTTGTCCATGGAAACAGTTTCGCATAATGGTTCATTCGTGATGCTGGCTACGGCAATAGTCCAGGTACTTAATCAGTATGGACAATTTTGGATGTTTCGAGCTATACTTGACAACGGTTCACAGATCAGCATAATAACAAGCGAAGGGATCAAAAAGCTTGGATTGCAAGGTGTTGAGCATAATATGTCTCGACAGGTACATTCACCTTCAAGGATGTGCACCACTTCACCGGATAATAACTACGTCGAATGTGGCGCATCATATAAAACTAAAGTCGACATGATAGGTGGAACAGGAACTTCACGTCAAGGATCGACCTTTTCCGAGAGAAACAAAGTGTTTAAATCTGAAGATTTCGATGAATCTTTTGCTGAATTACAAAGCCTAAAAGCGCATGTAGCCTTGTATTCTTATCTCCGAATCTACAAGTGTAAAAAATGTAACAAGTCTTTCCAGTCAGCGCAAAGTTTAAGAGAGCATAAACAATCACATTCTGCTTCACATAAATGTACTGAATGTGGTAAATCATATAGAAGCCGACAAAGTTTACAATTCCATTTAGCCTTACACACGAACCCGGGTACAAATAAGTGCAATGAGTGTGGAAAATCTTTTTCGACAGCTAAATATTTGACGAAACACAAAGCTTTACATTCTGATTTGAATAAATGTTATGAATGTGGTAAATCGTTTACCACGTTGGAACTCTTAAAAATCCATGTAGCCTTGCATAAGAATCCTGACCTTTATAAGTGTGATGAATGTGAGAAATCATTTGAAAGTCCACAAGGCTTACAAGCCCATTTCGCCTTACATTCGGACCCTGATATATATAAGTGTAATGAATGTGGAAAATCTTTTTCGACAGCACAATATTTGAGGAAACATAAAGCCTTCCATTCTGATTCGTATAAATGTGATGAGTGTGGTAAATCGTTTGCTACAATTGAAATCATGAAAGTACATGTAGCCTTGCATAAAAATCCTGACCTCTATAAATGTAATAAATGTGAGAAATCCTTTAGGTCAGCACAGTCTTTGCAGCGACACACAATTATACATTCTGACTTAAGTGAGTGTAATGAATGCGGTAAATCGTTTGGCACAACTCAAAGCTTCAAAATTCATTTAGCCCTACATAAGAATCCTGACCTCTACAAGTGTGATAAATGCGGGAAAGCATTTAAAGACGCGTATTATTTTAAGCAACATAAAGCTTTACATTCTGATTTAAATAAATGTGATGAATGTGGCAAATCATACGCTACATTACGGGCTTTAAAAGCGCATTTAGCACTGCATTCGAATCCCAATCTCTATAAGTGTAATATATGTGAAGATGCATTCGCTACTGCACTGAGTTTAAAGCGCCACCTGGACTGGCATTCGAATCCAAATCTTTATGAGTGTGATATATGTGGGAAATCCTTGAGGTCAGCGCATCATATGAAGGAGCATAAAGCTTTACATTCGGGTTTAAATAAATGTAATATATGTGGGAAATCGTTTTCCGTGCTTCAAGGTTTAAAAGTCCATCTGGCCTTGCATAACAATCCCGATATATATAAGTGTAATGAATGTGGAAAAGTCTTTGCAACCGAACAATACTTGAGGATGCATCAAGCTTCACACACTTCTTTAAATAAATGTGATAAATGCGGTAAATTATGTGGTTCATTGCGGTCTTTAAAAATGCATTTAGCCTTGCATTTGAATCCCGATCGCTATAAATGTAAGAAGTGTGGAAAAGCTTTTGCTAATTCGGGATCTTTCAATCGACATACAGCCTTGCACTCAAATTCCAATTATAAGTGTGATAAATGCGATCAATCctttaaatcattacaatctcTGAAGGACCACGCATTTTCACATTCCGATTTAAGTAAATGTTTTGAATGTGGTAGAGTGTTTAAATCGCGAAAAATGTTAAAAACCCATTTGGCCTTGCATTCGAATCCGGACCTCTATAAATGTAAGATTTGTGGAAAGGCTTTCGCCCAGCCGAGAAATTTCAAGAGACACATGGCCTTGCACTTGAATCCTGAACTATATAAATGCCATATATGCGCAAAGGCTTTCAATCAGTCGCGAAATTTCAATAGACATATGGCGTTGCATTTGAATCCTGAACTTTACAAATGTGATATATGTGATAAAGCTTATACAGCAGCAAATAGTTTAAAGCGTCATAGAGATGGACATTCTGAAGGCGATATAGCCTTTTCTGAGTTGACCGAGTAA
- Protein Sequence
- MLPYLRNEGKFAIALRNRKQENSPNASIDCIFTGKNVIKGEKANIRGDAHDAEEKMVENKTYSIGNPVDDFKRLHDDAGDKGKANEEIETEEKKERSDSDAESKRQNAENEEDPEEIWVTKEIGEEEVHTESSEKVTIDLDKPFAAERSPFSKVESKIRPKRIRMNDCDEEGKVAANPVAGHSVVSKNTSNKQVIKSNEILPPALSMETVSHNGSFVMLATAIVQVLNQYGQFWMFRAILDNGSQISIITSEGIKKLGLQGVEHNMSRQVHSPSRMCTTSPDNNYVECGASYKTKVDMIGGTGTSRQGSTFSERNKVFKSEDFDESFAELQSLKAHVALYSYLRIYKCKKCNKSFQSAQSLREHKQSHSASHKCTECGKSYRSRQSLQFHLALHTNPGTNKCNECGKSFSTAKYLTKHKALHSDLNKCYECGKSFTTLELLKIHVALHKNPDLYKCDECEKSFESPQGLQAHFALHSDPDIYKCNECGKSFSTAQYLRKHKAFHSDSYKCDECGKSFATIEIMKVHVALHKNPDLYKCNKCEKSFRSAQSLQRHTIIHSDLSECNECGKSFGTTQSFKIHLALHKNPDLYKCDKCGKAFKDAYYFKQHKALHSDLNKCDECGKSYATLRALKAHLALHSNPNLYKCNICEDAFATALSLKRHLDWHSNPNLYECDICGKSLRSAHHMKEHKALHSGLNKCNICGKSFSVLQGLKVHLALHNNPDIYKCNECGKVFATEQYLRMHQASHTSLNKCDKCGKLCGSLRSLKMHLALHLNPDRYKCKKCGKAFANSGSFNRHTALHSNSNYKCDKCDQSFKSLQSLKDHAFSHSDLSKCFECGRVFKSRKMLKTHLALHSNPDLYKCKICGKAFAQPRNFKRHMALHLNPELYKCHICAKAFNQSRNFNRHMALHLNPELYKCDICDKAYTAANSLKRHRDGHSEGDIAFSELTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -