Oorn044644.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- -
- Assembly
- GCA_963969285.1
- Location
- OZ017739.1:70259376-70259918[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.5e-06 0.0029 20.4 0.0 12 36 4 28 2 33 0.90 2 2 2.7 1e+03 2.7 0.1 17 30 110 128 106 129 0.72
Sequence Information
- Coding Sequence
- ATGCAAATAGTGCACAACAAGGAGATGGGAGTCATTGCGGCTGCTAGGATTTACAATATCCCGTCAAGAACGCTTAGACGACATTCGTTAACAGGAAAGCTCAAAGTACCACACGGGAGGCTGCCTGTTTTTCCAGAAGAGCATGAGAAAAAGTTGGTAGTTCatataaaaaaacttgaaaaagttgGCTTTGCATCTGATCGCAAGGATGTTAAAGAAATGGCCTACCAGTTAGCTCAAAAGCTTAATATTAAAAATCCGTTCTCAAATGAATCTCAGCAAGCAGATAATATTTGGTTTAATTGGTTCTTAAAACGAAATCCTGAGTTAAGTCAGCAAAAGGCTGAAGGTTTGTCACTTGCTAGAGCTTATGGTGTTAATCGGAAGgatgttcatgatttttttacacTGCTAGCTCATATATATGAAGAAAATGACTTAGGCCAACATCCAGACCAAATATTTAACATGGATGAAACTGGCatccaaataaataataaagcTGGAATAGTGATTACCAGCAAAGGAGCGTTTATACTTTGA
- Protein Sequence
- MQIVHNKEMGVIAAARIYNIPSRTLRRHSLTGKLKVPHGRLPVFPEEHEKKLVVHIKKLEKVGFASDRKDVKEMAYQLAQKLNIKNPFSNESQQADNIWFNWFLKRNPELSQQKAEGLSLARAYGVNRKDVHDFFTLLAHIYEENDLGQHPDQIFNMDETGIQINNKAGIVITSKGAFIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00931244;
- 90% Identity
- -
- 80% Identity
- -