Oorn038308.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- -
- Assembly
- GCA_963969285.1
- Location
- OZ017738.1:490632675-490633052[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-09 1.6e-06 30.9 0.1 4 40 13 50 10 54 0.91 2 2 8.4 3.2e+03 1.1 0.0 31 42 53 65 52 67 0.90
Sequence Information
- Coding Sequence
- ATGGCATTGGTCACTAGGAAAAACTGGAATCACTCTGCAATGATTAGTGCCGCTGCTGCTGTGAGGAACAAACAAATGGGCTATTTAAAAGCTTCAAAGGTGTATGATGTTCCGAAAAGGATGCTAGAATGTTACACTAAGAAAGAAGGTGAGCTTTCAACACTAGTAAATACACGCATAAGGAGACGGCCAGCATTACCGGAAGGCTTAGAAATCGAGCTCAAAGACTATTGGTTAGAAGTAGATAAACGAATTTATGGCCTACGAGTCATGGACATAAAATACATGGCATTTCATCTGGCcataaaaaacaaaatcaaacataaGTTTAGTCTTTCTAAGGCTTCTACAGGTAAAAATGGTTGCGTAACTTCATAG
- Protein Sequence
- MALVTRKNWNHSAMISAAAAVRNKQMGYLKASKVYDVPKRMLECYTKKEGELSTLVNTRIRRRPALPEGLEIELKDYWLEVDKRIYGLRVMDIKYMAFHLAIKNKIKHKFSLSKASTGKNGCVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -