Oorn035812.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Odontomyia ornata
Gene Symbol
JRKL
Assembly
GCA_963969285.1
Location
OZ017738.1:460826461-460828371[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.8e-11 6.8e-09 38.4 0.1 5 40 1 37 1 40 0.94

Sequence Information

Coding Sequence
ATGGCTCAGGCTGTTCGAGCAGTTTTAGACGGAACTATGGGCCTTAAAAAAGCAGCTACGTCACATGGAGTTCCGAAAAGTACCCTTGAGAGGAAGGTGAAAAAAGCTCGTACCAATAGCTTTACACCAGAAGCTGCAGCAGTAAAAAAATTGGGCAGGTATGAAACAGTTTTTAGTGCAGAGCAAGAGAAACAGCTTGTTGGTCATGCTTTGGCTTTGGAAGAGAGGTTATTTGGTATAACCTTAACAGATCTGCGTATGCTAGCATTTGAGTTAGCTGAGAGGAACAATATtccccacaatttccacaaagaGAAAAGGATGGCTGGAAAGTGTTGGCTCTATTCGTTCCTTGCCAGAGATAAGATGCTTAGCCTCGGAAATCCCGAACCTACAAGTGTGACTCGAGCAAAGGGTTTCAACCGGACTTcggttcaaaaattttatgagctcTTACATTCCCTTATTGAAAAGCATGGATTTGCTCCAAACGATATCTATAACGCAGATGAGACAGGGATACTCACAGTACCCAACAAGCCTTCAAAGGTGCTAGCACTGCGAGGCAAGAAACAAGTCGGGAGTCTATCTTCTGCTGAACGCGGAGTTTTGATTACTGTTGAAACATGCATGAGTGCAGCTGGGATTTTTATTCCTCCGATGTTTGTATTTCCTAGAGTAAAAGAAAACCCAAGGCTTATGGATGATGCTTTCCCAGGGTCATTTGCAGTATACCACAAGTCTGGCTGGATCAACAAGGACACCTTTATAGTATGGTTTAAGAAATTTGTCGAATTTTCAAAtcctaccacaaaaaagcctGTATTGTTGCTACTCGATGGACACTGCAGTCACACTAAAAGTTTGGAACTTGTTAACTtggcaagaaaaaagaatgtcatCATTCTTACCTTTCCTCCACATACCACCCATCGTCTTCAGCCTCTCGATGTCGCCTTCGTGGCTCCACTTAGTTCATATTATGAGCAGGAATTCAGAAAATGGCTGTTCAATCATCCAGGTAGGTGTGTTACAATATTCGAGGTTGGAAAGCTATTTAACGCAGCCTTTTCGCGTGCAGCTCTTGCAGAACCTGCTGTAAAAGGGTTCCGTAAAACTGGTATAAGTCCTTTCAATCCTGATATTTTCCCAGACCACTTGTATGCACCCTCTCTAACAACAGATCACCCAATGCCGGAAGTTCCGAATACTAGCACTATTCAACAAAATCAAGCCACTTCAGAAAGTTCTACATTGACTGAAACAGAACTATCACAGCATCCATCAAAAGAAACACCAGGCTTGCTCCAAGAACCTCTTCACACTGAGCTCCGGAACAACAATGCCACAACATTCAAGCTAGACCAACCTACTACTTCCTCAGGGAACACAGGCTTAGAATTCACTCAAAGTCAGCCTAAGCTGCCATTTTCGATCCCTCCGATGTTTGTTCTCCCTGTTCCGCAAGTTCAAGGGCCTCGACttgaaaaaaaagttgataagAGGACGGGGAAAACTGTTGTGATAACATCATCTCCGTATAAGAATGAgctacaaaaagaagaaaagtatCGAGAGGATAAGGAAAACAGAAGAATCAGTAGCATCAGACCGAAGGAAAGGAAATCCTTGTTCAAAGCTCCAAATAAGAAAAACAGTAAGTCCCAAGGCCAAAATATGTCAGTTCCTAAAAAGCTTTTACCTGCTAACCGGGAATGTCAGGTGTCCTCGTCTGAAGATGAAGATGCCAATgaagaaacttgtattttttgCAACGCTCTCTACATTGAGTCGAGGGCCGGAGAAGGTTGGATTCAATGTTTAAGATGCAAAGGATGGGGCCACGAAGCATGTTCTATGGCGGAAGAAGACGACGAAACCTATTTGTGTGACTTTTGTTCTGTGAAATGA
Protein Sequence
MAQAVRAVLDGTMGLKKAATSHGVPKSTLERKVKKARTNSFTPEAAAVKKLGRYETVFSAEQEKQLVGHALALEERLFGITLTDLRMLAFELAERNNIPHNFHKEKRMAGKCWLYSFLARDKMLSLGNPEPTSVTRAKGFNRTSVQKFYELLHSLIEKHGFAPNDIYNADETGILTVPNKPSKVLALRGKKQVGSLSSAERGVLITVETCMSAAGIFIPPMFVFPRVKENPRLMDDAFPGSFAVYHKSGWINKDTFIVWFKKFVEFSNPTTKKPVLLLLDGHCSHTKSLELVNLARKKNVIILTFPPHTTHRLQPLDVAFVAPLSSYYEQEFRKWLFNHPGRCVTIFEVGKLFNAAFSRAALAEPAVKGFRKTGISPFNPDIFPDHLYAPSLTTDHPMPEVPNTSTIQQNQATSESSTLTETELSQHPSKETPGLLQEPLHTELRNNNATTFKLDQPTTSSGNTGLEFTQSQPKLPFSIPPMFVLPVPQVQGPRLEKKVDKRTGKTVVITSSPYKNELQKEEKYREDKENRRISSIRPKERKSLFKAPNKKNSKSQGQNMSVPKKLLPANRECQVSSSEDEDANEETCIFCNALYIESRAGEGWIQCLRCKGWGHEACSMAEEDDETYLCDFCSVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01088066; iTF_01088177; iTF_01088116; iTF_01088064;
90% Identity
iTF_01088116;
80% Identity
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