Oorn029026.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- -
- Assembly
- GCA_963969285.1
- Location
- OZ017738.1:375494276-375494929[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.7e-14 1.8e-11 46.7 0.1 1 41 15 56 15 60 0.93
Sequence Information
- Coding Sequence
- ATGCCtcaaaaatatcaaagaaaatcTACAAGAAACAGTTGGAGTGAGACAAATATGGCTCAGGCTGTTCGAGCAGTTTTAGGCGGAACTATGGGCTTTAAAAAAGCAGCTACGTCACATGGAGTTCCGAAAAGTACCCTTGAGAGGAAGGTGAAAAAAGCTCGTACCAATAGCTTAACACCAGAAGCTGCAGCAGTACAAAAATTGGGCAGGTATGAAACAGTTTTTAGTGCAGAACAAGAGAAACAGCTTGTTGGTCATGCTTTGGCTTTGGAAGAGAGGTTATTTGGTATAACCTTAACAGATCTGCGCATGCTAGCATTTGAGTTAGCTGAGAGGAACAACATTCCCCACAGTTTCAACAAAGAGAAAAGGATGGCTGGAAAGTGTTGGCTCTATTCGTTCCTTGCCAGAAATAAGATGCTTAGCCTCAGAAATCCCGAACCTACAAGTATGGCTCGAACAAAGGGTTTCAACCGAACTTCggttaaaaaattttatgagctctTACATTCTCTTATTGAAAAGCATGGATTTGCTCCAAACGATATCTTTAACGTAGATGAGACAGGGATACTCACAGCACCCAACAAGCCTTCAAAGGTGCTAGCACTGCGAGGCAAAAAAACAAGTCGGCAGTCTATCTTCTGCTGA
- Protein Sequence
- MPQKYQRKSTRNSWSETNMAQAVRAVLGGTMGFKKAATSHGVPKSTLERKVKKARTNSLTPEAAAVQKLGRYETVFSAEQEKQLVGHALALEERLFGITLTDLRMLAFELAERNNIPHSFNKEKRMAGKCWLYSFLARNKMLSLRNPEPTSMARTKGFNRTSVKKFYELLHSLIEKHGFAPNDIFNVDETGILTAPNKPSKVLALRGKKTSRQSIFC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01087991;
- 90% Identity
- iTF_01087965;
- 80% Identity
- -